PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00294-abinit-gene-1.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 611aa    MW: 67632 Da    PI: 6.221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00294-abinit-gene-1.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84.1e-13442488455
                                                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                                                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                                            +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  augustus_masked-scaffold00294-abinit-gene-1.10-mRNA-1 442 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYINELQ 488
                                                            799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-5552240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.326438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-18441503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.47E-15441492No hitNo description
Gene3DG3DSA:4.10.280.101.7E-18442502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-16444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MKIEMGLGGG VWNDEDKTMV AAVLGTRAYD YLISSSVSNE NLLMAVGSDE NLQNKLSDLV  60
DCPSALNFSW NYAIFWQLSR SKSGDWVLGW GDGSCREPRE GEESQAMQIL NLRLEDEAQQ  120
KMRKRVLQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPRGEGG PGKCFASGKH  180
VWLSDILKSQ SDYCVRSFLA KSAGIQTIVL VPTDGGVFEL GSVRSVGESL ELLQSIRSSF  240
STHPSPGRIN SVPVLSVINE KKDENTPFTN LGIVDRVEGI PKIFGQELNL GNLGRPHYRE  300
KLAIRKMEER PWEAYPNGSK IAYPSPRNGI HGSSWGHIHG VKQGGPAEIY GPHAPNNLQE  360
LVNGAREEFR LNNYQPQKQV QMQIDFSGAT SRPSVISRPI SAESEHSDVE ASCKEERATA  420
ADERRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA  480
ISYINELQAK LKIMEAEREN LGSSSRDVSA LEANPNTENL YQVPDVDIHA AQDEVIVKVS  540
CPLDSHPASR VIQAFKEAQV TVVESKLSAA NDTVLHTFVI KSQGSDQLTK EKLIAAFSQE  600
SNSLQALSSV G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-29436498264Transcription factor MYC2
5gnj_B6e-29436498264Transcription factor MYC2
5gnj_E6e-29436498264Transcription factor MYC2
5gnj_F6e-29436498264Transcription factor MYC2
5gnj_G6e-29436498264Transcription factor MYC2
5gnj_I6e-29436498264Transcription factor MYC2
5gnj_M6e-29436498264Transcription factor MYC2
5gnj_N6e-29436498264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1423431RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876915.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2N9HW560.0A0A2N9HW56_FAGSY; Uncharacterized protein
STRINGXP_006444826.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]