PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09854-augustus-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 321aa    MW: 35313.5 Da    PI: 7.5675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09854-augustus-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-14128173555
                                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                   hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +++eY+k+Lq
  maker-scaffold09854-augustus-gene-0.9-mRNA-1 128 HNLSEKRRRSRINEKMKALQNLIPNS-----NKSDKASMLDEVIEYLKQLQ 173
                                                   9************************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-19120183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-20120183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.047123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-12128173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-15128177No hitNo description
SMARTSM003532.7E-16129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MADLYGTKVT SSSVAPESED ISTFLNQFLH HNSSSSSSAS SSSCMAYKSK YMYSQPSHAQ  60
SMFLRAAGSE NRSESEYRVV RDGNSSVAIE SSYGVVFSDP GADMKEKVPE KPVPPRSSSK  120
RSRAADVHNL SEKRRRSRIN EKMKALQNLI PNSNKSDKAS MLDEVIEYLK QLQLQVQMLS  180
MRNGLSLHPM CLPGVLQPIQ LPQPGMSFDE RNGCLNSSRG MGTFFGNEES LRQSASNLPN  240
QCTLSNQPFV IPTATNLTIS ETSICSINPL VLQSNQSIDE SAQAHYHTLN LPSSQEIRSD  300
GTLQLQSDTS HSRKISLLDV P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881642.10.0transcription factor PIF1-like isoform X2
TrEMBLA0A2I4ESC41e-97A0A2I4ESC4_JUGRE; transcription factor SPATULA-like isoform X2
STRINGevm.model.supercontig_21.1764e-91(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-40bHLH family protein