PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold11803-augustus-gene-0.7-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 350aa MW: 37774.1 Da PI: 10.4377

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold11803-augustus-gene-0.7-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	9.7e-10	199	243	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L maker-scaffold11803-augustus-gene-0.7-mRNA-1 199 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 243 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-15	192	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.12	194	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-14	196	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-7	199	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-11	200	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
YKQKQTKTKA KQRKAKQNSL SLSLFFACRC SLKLVTRRRD SPRLGRVRLR LFFLMANNPS 60 EATNDDFFEQ ILALPSFASA EAGLTGADGG LGGSGTGPPP MMLQLSSGDL GGGGGGSAGF 120 HGQVFPLGLS LEQGKGGFMK PEEASGSGKR FRDDVVDGRA SSMKNVFHGQ PMTNTAAAPH 180 PPAMRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL VPSVNKTDRA AMLDEIVDYV 240 KFLRLQVKVL SMSRLGGAGA VAPLVTDIPL SSVEEEGSEG GRNQPAWEKW SNDGTERQVA 300 KLMEENVGAA MQFLQSKALC IMPISLASAI YQTQPPDTSS IVKPENNPPS

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

YKQKQTKTKA KQRKAKQNSL SLSLFFACRC SLKLVTRRRD SPRLGRVRLR LFFLMANNPS  60
EATNDDFFEQ ILALPSFASA EAGLTGADGG LGGSGTGPPP MMLQLSSGDL GGGGGGSAGF  120
HGQVFPLGLS LEQGKGGFMK PEEASGSGKR FRDDVVDGRA SSMKNVFHGQ PMTNTAAAPH  180
PPAMRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL VPSVNKTDRA AMLDEIVDYV  240
KFLRLQVKVL SMSRLGGAGA VAPLVTDIPL SSVEEEGSEG GRNQPAWEKW SNDGTERQVA  300
KLMEENVGAA MQFLQSKALC IMPISLASAI YQTQPPDTSS IVKPENNPPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	208	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018812362.1	1e-179	PREDICTED: transcription factor UNE12-like
Swissprot	O22768	1e-136	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A2N9F640	1e-179	A0A2N9F640_FAGSY; Uncharacterized protein
STRING	evm.model.supercontig_52.97	1e-171	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5449	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-106	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]