PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03962-augustus-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 284aa    MW: 30348.6 Da    PI: 4.8619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03962-augustus-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.7e-11165212455
                                                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  maker-scaffold03962-augustus-gene-0.15-mRNA-1 165 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 212
                                                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.98E-11159216No hitNo description
SuperFamilySSF474594.71E-18159231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-18161231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDPPLVSESS FSAANPAAYS LAELWPFGGS EPGTGSLGLR MGNLGPNPNG FAESSGNRDG  60
SAEESTVTEQ SGGGGGSRKK RKEVSSEDES SKMVSTSSAN DLLSESNGKR MKVAGSCDDN  120
DGSKAEVEAS SAADNKPAEG STQPSEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER  180
MKILQDLVPG CNKVIGKALV LDEIINYIQS LQRQVEFLSM KLEAVNSRMG MNPVMDGFPP  240
KDLGSQPFDA SGMILGSQAM REYPQSSQLE WLHMQVGGSF ERAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782RKKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900894.10.0transcription factor bHLH79
SwissprotQ9LV171e-87BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A2I4FIZ41e-164A0A2I4FIZ4_JUGRE; transcription factor bHLH79-like isoform X1
STRINGXP_006476705.11e-150(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.13e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]