PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00256-snap-gene-1.21-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 350aa    MW: 36755.2 Da    PI: 6.3753
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00256-snap-gene-1.21-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-10199243554
                                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                h+++Er RR+ri +++  L+el+P+a      K + a++L + v+Y+k L
  maker-scaffold00256-snap-gene-1.21-mRNA-1 199 HSIAERLRRERIAERMKALQELVPSA-----NKTDRAAMLDEIVDYVKFL 243
                                                99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.39E-11192248No hitNo description
SuperFamilySSF474596.54E-15192253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.158194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-15196254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7199243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-11200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAGNPPEGLG DDFFEQILAV QPTYTTSEAA AVVAGYGGGE AGSMPMVLQL GSGGGGGGGD  60
GGGGSGGGGG GLRGMNLGMG MAPPLGLNLE QQQQHGGFLR QERFREEVVD GNHSNSHINN  120
GSSSSATHGI NERDSVHMTS LFPAFGQMQA HSLRPTAPPP SQLHQFHSQP THGPGVAAPH  180
PPGIRPRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPSANKTDRA AMLDEIVDYV  240
KFLRLQVKVL SMSRLGGAGA VAQLVADVPL SSVEGEGIEG GTNQQAWDKW SNDGTEQQVA  300
KLMEEDVGAA MQFLQSKALC IMPISLASAI FRTHQPDAPT LVKPESNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15164SGGGGGGGDGGGGS
2203208RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023907184.10.0transcription factor UNE12-like
SwissprotO227684e-91UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2N9G8841e-175A0A2N9G884_FAGSY; Uncharacterized protein
STRINGEMJ066851e-162(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.22e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]