PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11285-snap-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 327aa    MW: 37221.2 Da    PI: 4.3708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11285-snap-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.5e-12163207654
                                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                ++ErrRR+r+N++++ Lr+++Pk     sk ++  +iL  +++Y+k+L
  maker-scaffold11285-snap-gene-0.6-mRNA-1 163 LMAERRRRKRLNDRLSMLRSIVPKI----SKQMDRTSILGDTIDYMKEL 207
                                               589*********************6....588***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.116157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-15160223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9163207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-11163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-15164219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-4164219No hitNo description
CDDcd048739.50E-5253294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDMELNENVF LEELLALRRD TFETVPTEMN ELFNSGWSFD YFDQNPSAIV FPNSCYEQNM  60
DSTSYSFNEV YCPYGNEFSA PQLTDSSLTT LDTPPFPVQE DYPLSMMEEE LGILGDEIHN  120
LEVQASCKVE PIQSPEVPVF NMDTCLQGKN RAKKIQGQPS KNLMAERRRR KRLNDRLSML  180
RSIVPKISKQ MDRTSILGDT IDYMKELLDK INHLQQEIEV NSNVMGIFKD VKPNEVVVRN  240
SPKFDVERRN ADTRVEICCA GKPGLLLSTV NTLEALGLEI QQCVISCFND FAMQASCSEE  300
LEQRTLLGSE DIKQALFRNA GYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165172ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885485.10.0transcription factor bHLH93-like
SwissprotQ9LSL15e-83BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2I4ENV60.0A0A2I4ENV6_JUGRE; transcription factor bHLH93-like
STRINGEOY155581e-175(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-85beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]