PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06761-snap-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 210aa    MW: 23855.5 Da    PI: 8.741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06761-snap-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-133377755
                                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                                Er+RR+++ + f+ L  llP++   p  K++K++i+ +Av+YIk L+
  maker-scaffold06761-snap-gene-0.9-mRNA-1 33 RTERQRRKKMSNMFSSLHALLPQL---P-DKVDKSTIVNEAVKYIKTLE 77
                                              57*********************6...3.9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-152587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-112581No hitNo description
PROSITE profilePS5088814.1832676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-133187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-93282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-113377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.4E-4161206No hitNo description
SuperFamilySSF550214.58E-5162209No hitNo description
CDDcd048731.51E-6163197No hitNo description
PROSITE profilePS5167110.302163210IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEEEKEVLVG RKRNRRSGKA EGGGESEHET RIRTERQRRK KMSNMFSSLH ALLPQLPDKV  60
DKSTIVNEAV KYIKTLEHTL QTLQKQRIEK LQNGMIVEYE APLMITSQAE QLKLKEEFLA  120
NKESSKNFSM SAKTCQSLLI PPCFQTWSSP NVVLNLCGSD DAQISVCSLR KPGLLATIFE  180
ILEKHNLDVV SAHISSDNCR SLYMIHAHFA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4627884e-32AM462788.2 Vitis vinifera contig VV78X037236.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015384271.16e-87transcription factor bHLH95-like
TrEMBLA0A2H5NHG97e-85A0A2H5NHG9_CITUN; Uncharacterized protein
STRINGXP_006434734.12e-84(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.16e-39bHLH family protein