PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03159-snap-gene-0.20-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 275aa    MW: 30077.9 Da    PI: 6.859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03159-snap-gene-0.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.7e-1285131354
                                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                ++h+e+ErrRR+riN  + +Lr+l+P        K++Ka+ L +++  +k+L
  maker-scaffold03159-snap-gene-0.20-mRNA-1  85 KSHSEAERRRRERINAHLTTLRSLVPCT-----DKMDKATLLAEVISQVKEL 131
                                                58*************************7.....6**********99988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.76482131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1385134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-985131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1386135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-1288137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGSYSYNSKN CSYGYNNQNP SFGPEFQRLF DPFSNSLGGF NGVLRGGPAL SHSLVLDSEK  60
GELVKAPARV GKKGVSEAKA LAALKSHSEA ERRRRERINA HLTTLRSLVP CTDKMDKATL  120
LAEVISQVKE LKKTACEESQ GFLIPMDDDE VKVEICDDGA EDGAVSYRAS LCCDYRPQLL  180
SDLRQAIDNL QLELVKSEIS TLGSRVTNAF VYTCRKAGEN TDMEQCQCIA NSVHDALNSV  240
LEKAAAASAL PEYSPRTLPS KRRRTTCFDT SCSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023907847.11e-166putative transcription factor bHLH107
TrEMBLA0A2N9JB811e-125A0A2N9JB81_FAGSY; Uncharacterized protein
STRINGXP_004295576.11e-104(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-33bHLH family protein