PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04425-augustus-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 302aa    MW: 33366.2 Da    PI: 7.2975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04425-augustus-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.2e-161564255
                                                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                                   r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  maker-scaffold04425-augustus-gene-0.12-mRNA-1 15 RSKHSVTEQRRRSKINERFQILRDLIPNS----DQKRDTASFLLEVIEYVQYLQ 64
                                                   899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-191185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-221285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.3611363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-141568No hitNo description
PfamPF000102.6E-131564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-121969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKLDAKNNDK ASAIRSKHSV TEQRRRSKIN ERFQILRDLI PNSDQKRDTA SFLLEVIEYV  60
QYLQERVQKH EGSYQGWSSE PTKLMPWRNS HWRVQNIFGH PQTIKNGSGL GTTFPGKFDE  120
NNVSITPTML TSTQNPVESD PSRDITCKPM DRQPELANKG LPLPIPLQAN VPISVRGDGV  180
QAHPLQGLVS DAQSTESAMT SETLNQQEEL IIEGGTISIS SVYSQGLLNT LTQALQSAGV  240
DLSQASVSVQ IDLGKRANRG MTSGTSIAKD HENPPSSHQA MTHLTDAGSR EDSDQAQKRL  300
RT
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023917226.10.0transcription factor BIM2
RefseqXP_023917227.10.0transcription factor BIM2
RefseqXP_023917228.10.0transcription factor BIM2
RefseqXP_023917229.10.0transcription factor BIM2
RefseqXP_023917230.10.0transcription factor BIM2
SwissprotQ9CAA41e-112BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A2I4DUM70.0A0A2I4DUM7_JUGRE; transcription factor BIM2-like
STRINGEMJ237641e-165(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-115BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]