PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | augustus_masked-scaffold06142-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27247.1 Da PI: 8.0244 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38 | 3e-12 | 71 | 123 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++h e+Er+RR+++ + + Lr+ lP + ++K s ++ +A +YIk+L+ augustus_masked-scaffold06142-abinit-gene-0.0-mRNA-1 71 QKMMHREIERQRRQEMATLYVALRSFLPLEF--IKGKRSISDHINEAANYIKHLE 123 6899*************************65..********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.64E-11 | 68 | 127 | No hit | No description |
SuperFamily | SSF47459 | 4.97E-14 | 69 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.154 | 70 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-9 | 71 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-10 | 72 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-4 | 76 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MFPLHQSNEL VFKVFADPHH QHKISQDLIM GQASLDGSDF NTSKSMGKGL RRKLCDNLDK 60 NFVNCNDNKK QKMMHREIER QRRQEMATLY VALRSFLPLE FIKGKRSISD HINEAANYIK 120 HLEKQIKELS SARDVLKGFS NLSTTDQGQG STSQPSCFTI HPCCGGVEIV ISSGFREESF 180 PLSKVLELLL EGGLTVLNCT SSKVNERFLH TVQCEGSDST CLDLSGLQKK LNEVIPSMNS 240 LSP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 50 | 71 | RRKLCDNLDKNFVNCNDNKKQK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023910969.1 | 1e-138 | transcription factor bHLH36-like | ||||
Swissprot | Q9STJ6 | 6e-45 | BH126_ARATH; Transcription factor bHLH126 | ||||
TrEMBL | A0A2N9EAZ4 | 1e-107 | A0A2N9EAZ4_FAGSY; Uncharacterized protein | ||||
STRING | XP_008234326.1 | 5e-79 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25410.1 | 9e-41 | bHLH family protein |