PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold10265-snap-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 312aa    MW: 34838.8 Da    PI: 9.0518
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold10265-snap-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-13124175155
                                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               +r++h ++Er+RR+++N+ +  L++++P +   + ++ + a+iL  A++++k+L+
  maker-scaffold10265-snap-gene-0.9-mRNA-1 124 QRMTHIAVERNRRKQMNDYLTVLKSMMPAS---YVRRGDQASILGGAINFVKELE 175
                                               79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.81E-13122179No hitNo description
SuperFamilySSF474599.29E-17122189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-11124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-14124187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTLEAVVFQQ DSFNNGCRDI YALGAGGTWS YGLGLKEDKV YFEKLGNNVE QVSIANLESL  60
PSSMVQGVKE QDANTASPDN CTITDRGFLA QGLSLVEAPA AATMGRRKRR RTRRTKNKEQ  120
MENQRMTHIA VERNRRKQMN DYLTVLKSMM PASYVRRGDQ ASILGGAINF VKELEQLIQS  180
MEAQKGIKQR LDNSLSSGLF SGFFTLPQYS TCSNESSESM MEKRSAIADI EVTMVESHAN  240
IKILSRKHPK QLLKMVAALQ SLHLIVIHLN VTTVDNMVLN SFSVKVEDDS KLTSVNEIST  300
AVYEMVGRIQ KE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRKRRRTRR
2106110RKRRR
3106111RKRRRT
4124135RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873456.10.0transcription factor bHLH94-like
TrEMBLA0A2N9EPG81e-158A0A2N9EPG8_FAGSY; Uncharacterized protein
STRINGVIT_07s0191g00240.t011e-130(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.13e-66bHLH family protein