PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold03647-augustus-gene-0.25-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 386aa MW: 44321.1 Da PI: 6.3094

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold03647-augustus-gene-0.25-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	4.1e-13	194	245	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++++k+L+ maker-scaffold03647-augustus-gene-0.25-mRNA-1 194 QRMTHIAVERNRRRQMNDHLNVLRSLMPAS---YIQRGDQASIIGGAIDFVKELE 245 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.36E-12	192	249	No hit	No description
PROSITE profile	PS50888	15.434	193	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-16	193	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-10	194	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-13	194	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-9	199	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
FFGDHSDLGY LEQEFVTTES LKVEEEAHFS NSMLEDKMPF LQMLQSVGSP HFLPFKEPSF 60 QTLLRLQHLK KPCEVYTYFP EMETQIQALE LESCVTNDIV ELHSPMKSET MDLQHPHSTS 120 CLEATVSSEC NQEKPNSAEK HYIESNSGSP PPWANPQSWP KQTQFSKSLA TVTRERKKRK 180 RTRPTKNKEE VENQRMTHIA VERNRRRQMN DHLNVLRSLM PASYIQRGDQ ASIIGGAIDF 240 VKELEHLLHS LEAQKRMRKN KEGNESSTVV PSNGFFMLPQ RRIGSDEENC GEEVKAENKS 300 EVAEIEVTVI QTHVNLKIHS QRRPGQLLKA IVALEDLRLT VLHLNITSSE SSVLYSFNLK 360 MEDECKLGSA DEIASEVHQI FQLYQR

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

FFGDHSDLGY LEQEFVTTES LKVEEEAHFS NSMLEDKMPF LQMLQSVGSP HFLPFKEPSF  60
QTLLRLQHLK KPCEVYTYFP EMETQIQALE LESCVTNDIV ELHSPMKSET MDLQHPHSTS  120
CLEATVSSEC NQEKPNSAEK HYIESNSGSP PPWANPQSWP KQTQFSKSLA TVTRERKKRK  180
RTRPTKNKEE VENQRMTHIA VERNRRRQMN DHLNVLRSLM PASYIQRGDQ ASIIGGAIDF  240
VKELEHLLHS LEAQKRMRKN KEGNESSTVV PSNGFFMLPQ RRIGSDEENC GEEVKAENKS  300
EVAEIEVTVI QTHVNLKIHS QRRPGQLLKA IVALEDLRLT VLHLNITSSE SSVLYSFNLK  360
MEDECKLGSA DEIASEVHQI FQLYQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	180	RKKRKR
2	176	181	KKRKRT
3	194	205	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023896624.1	0.0	transcription factor bHLH70-like isoform X1
Swissprot	O81037	6e-84	BH070_ARATH; Transcription factor bHLH70
TrEMBL	A0A2N9HXL7	0.0	A0A2N9HXL7_FAGSY; Uncharacterized protein
STRING	XP_008244210.1	1e-156	(Prunus mume)
STRING	EOX95575	1e-157	(Theobroma cacao)
STRING	EMJ19239	1e-156	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6894	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	1e-83	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]