PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01197-abinit-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 506aa    MW: 56188.4 Da    PI: 5.2245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01197-abinit-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.9e-13361407455
                                                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                                                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                                            +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  augustus_masked-scaffold01197-abinit-gene-0.14-mRNA-1 361 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 407
                                                            799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-4149233IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.61E-14360411No hitNo description
SuperFamilySSF474594.19E-18360427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-18361427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10361407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MDDKFWVNEE DRAMVESVLG TEACEFLVSS ASENVLSDLV TPRSELGVQR GLCQLVEGSC  60
WNYAIFWRVV SLKSGGSALI WGDGHCRDPK GAGAGDRNSR GDGSLEGVEK KEEVKKQVLQ  120
KLHASFGGLD EDNFAARLDG VLDVEMLYLS SMYFTFRCDL QCRLGESYMS GKSIWASDMP  180
SSLNNYQQRS LLAKLAGFQT VVFVPVKSGV VEFGSIESIP EEQTILDMVK TVFGESNYVQ  240
SKVFPKIFGH ELSLAGTKSR SVNINFSPKV EDDTGFASDT FEVQAIGTNH VYGNSSNGCQ  300
SDENEAKLFP QLNQMVVGGF SAQTRVSSLE LSKDDSSPQP DERKPRKRGR KPANGREEPL  360
NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI TYITDLQMKI RVLETEKELE  420
KNKLKQLPAS EIDFQERPED SVVRMSCPLD AHPVSGVIKM FREHQIVAQE SSISTENDKV  480
VHTFSIQTQG GAAEQLKEKL VGILSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-29355427274Transcription factor MYC2
5gnj_B4e-29355427274Transcription factor MYC2
5gnj_E4e-29355427274Transcription factor MYC2
5gnj_F4e-29355427274Transcription factor MYC2
5gnj_G4e-29355427274Transcription factor MYC2
5gnj_I4e-29355427274Transcription factor MYC2
5gnj_M4e-29355427274Transcription factor MYC2
5gnj_N4e-29355427274Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342350RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023887572.10.0transcription factor bHLH3
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A2N9FGV20.0A0A2N9FGV2_FAGSY; Uncharacterized protein
STRINGXP_006479569.10.0(Citrus sinensis)
STRINGXP_006443887.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-173bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]