PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01663-augustus-gene-0.33-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 716aa    MW: 79742.2 Da    PI: 6.0163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01663-augustus-gene-0.33-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.3e-14482528455
                                                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                    +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  maker-scaffold01663-augustus-gene-0.33-mRNA-1 482 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 528
                                                    7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-569191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625478527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-19480546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-19482544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-15482532No hitNo description
PfamPF000101.2E-11482527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17484533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MAAPPSSRLQ NMLQAAVQSV QWTYSLFWQL CPQQGTLVWA DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYDSLS AGETNQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGAG  120
LPGKAYSRRQ HVWLTGANDV DSKTFSRAIL AKSARVQTVV CIPLLDGVVE LGTTDKVQED  180
LAFVQHIQSF FTDHHHHNPH PPKPALSEHS TSNPASSSGH TRFHSPPVPP VYTSADPAIN  240
ANPEDEEEEE EEEEEEEDEG GESDSEAETG RNGRPMSIVN VAVPTTDQPS ELMQLEMSED  300
IRLGSPDDAS NNLDSDFHML AVTQSGNQIA DHHHHHLHRR ADSYRGESAP RWPMLQEPTS  360
SGIHIQPPSS GGTPPLDDLT QEDTHYSQTV STILQTQPRW ATDSSTYTPY SNQSAFAKWT  420
IRVDHHLQVP LEGTSQWLLK YILFSVPLLH TKYRDENSPK LRDGDVATRF KKGTPQDELS  480
ANHVLAERRR REKLNERFII LRSLVPFVTK MDKASILGDT IEYVKQLRKK IQDLETRNRQ  540
MEVDQRSRST GDLQRSNSLK DLRATTSGVI SDRTRASLSG LDKRKLRIVE GSGGVAKSKM  600
VVETPPPPPP PPPPPPPPPP PSSPPATPTG TSVEVSIIES QGLLELQCPY REGLLLDIMQ  660
KLRELRIETT TVQSSLNNGF FVAELRAKVK ENVNGKKTSI VEVKRAINQI IPHTDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-2091919192Transcription factor MYC3
4rqw_B1e-2091919192Transcription factor MYC3
4rs9_A1e-2091919192Transcription factor MYC3
4yz6_A1e-2091919192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1486491ERRRRE
2487492RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872840.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2N9GWJ10.0A0A2N9GWJ1_FAGSY; Uncharacterized protein
STRINGEOX947960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-101bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]