PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00859-augustus-gene-0.50-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 28621.6 Da PI: 8.5757 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.9 | 8.4e-14 | 72 | 118 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +++++k+L maker-scaffold00859-augustus-gene-0.50-mRNA-1 72 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGTVIDHVKDL 118 79*************************8.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.269 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-15 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.18E-13 | 72 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.52E-11 | 72 | 121 | No hit | No description |
Pfam | PF00010 | 2.1E-11 | 72 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-11 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.0018 | 166 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MENCYHGGWP EEENWAQCHA PLNNESSYLV PWPAPPHVSA STRFQFHGLP SWSMPIEGVA 60 DDGGGATASS SKSHSQAEKR RRDRINAQLA TLRKLIPKSD KMDKAALLGT VIDHVKDLKR 120 KANEVSKACT LPTEVDEVTI DYDLAQDVKL TNVDNNSKDN VFIRASFCCD DRPELFTELI 180 HVLKTLRLTA VKADIASVGG RIRSILVLCT KETEVGVCVS TLRQSLKLVL NKIASSSVQS 240 NYRIRSKRQR FFLPCSQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018821912.1 | 1e-131 | PREDICTED: transcription factor bHLH51 | ||||
TrEMBL | A0A2N9ITD1 | 1e-176 | A0A2N9ITD1_FAGSY; Uncharacterized protein | ||||
STRING | EOY17729 | 1e-112 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5796 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 7e-55 | bHLH family protein |