PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07211-snap-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 438aa    MW: 46970 Da    PI: 9.1284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07211-snap-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15260305555
                                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  maker-scaffold07211-snap-gene-0.10-mRNA-1 260 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 305
                                                9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-19253315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-17260309No hitNo description
PfamPF000102.9E-13260305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-18260313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-18261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MHGLGPPRGP VKPIPSTTSL AKYNTWDKPR ASGTLESIVN QATLIPQHQH QHHSQHNHNS  60
NNHGQKPRSF DSGGGSDMVS WFHHRAAVAA AATTSATMTM TMDALVPCSN RTDDQTTTQA  120
GLGGSGTCVV GCSTRVGSCS GPVASGTMTH DQDENVIIKR ANKEARVAVP AAAAAAAAAA  180
APEWSGRDQS VSGSATCGRD SQHVTIDTCE RDLGATTTGD DHDSVCHSRP QREARDGEDK  240
KKSSAKSSVS TKRSRAAAIH NQSERKRRDK INQRMKTLQK LVPNSSKTDK ASMLDEVIEY  300
LKQLQAQVQM MSRMSMPPMM LPMAMQQQLQ MSMMAPMGMG MGMGMGLGMG MDMNNINRSN  360
ISGISPVLHP TAFMPMTSWD AGSGDRIQAN SPAVMADPFS TFLACQSQPM TMDAYSRMAA  420
AMYQQQQLHQ PPPSSSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268ERKRRD
2264269RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885533.10.0transcription factor UNE10
SwissprotQ8GZ384e-87UNE10_ARATH; Transcription factor UNE10
TrEMBLB9RD581e-170B9RD58_RICCO; DNA binding protein, putative
STRINGXP_002511647.11e-170(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]