PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM621
Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 170: /-------------------- RrC1414_p2 [Raphanus raphanistrum] (3) | | /----- GSBRNA2T00095944001 [Brassica napus] (15) | /-100+ /-100+ | \----- XP_013604917.1 [Brassica oleracea] (72) | | /-100+ | | | | /----- GSBRNA2T00023184001 [Brassica napus] (84) | | | \-100+ | \-100+ \----- XP_009108302.1 [Brassica rapa] (180) | | | | /----- RrC21993_p1 [Raphanus raphanistrum] (39) | \---100---+ /-100+ \----- Rsa1.0_00288.1_g00010.1 [Raphanus sativus] (190) | | | | /----- XP_013602599.1 [Brassica oleracea] (9) | | /-100+ | | | \----- GSBRNA2T00058940001 [Brassica napus] (124) | | | /-100-+ | | /----- XP_009144653.1 [Brassica rapa] (11) | | \------100-----+-100+ | | | \----- GSBRNA2T00075747001 [Brassica napus] (139) | | | /-100+ | \---------- RrC17833_p1 [Raphanus raphanistrum] (89) | | | | | \------------------------------ 676713906 [Sisymbrium irio] (23) /-100+ | | | \------------------------------------ Tp7g16960 [Thellungiella parvula] (44) | | | \----------------------------------------- Thhalv10024887m [Eutrema salsugineum] (80) | | /----- Cagra.3356s0014.1.p [Capsella grandiflora] (8) | /---100---+ | | \----- Carubv10004566m [Capsella rubella] (91) /-99-+ | | | /-99-+ /---------- AT4G17230.1 [Arabidopsis thaliana] (87) | | | | | | | | \-100+ /----- 493153 [Arabidopsis lyrata] (93) | | | \-100+ | | | \----- Araha.24127s0007.1.p [Arabidopsis halleri] (111) | | | | \------------99-----------+ /----- Csa11g032470.1 [Camelina sativa] (48) /-99-+ | /-98-+ | | | | \----- Csa10g028250.1 [Camelina sativa] (85) | | | /-100+ | | | | \---------- Csa12g049530.1 [Camelina sativa] (120) | | \-65-+ /-100+ | \--------------- Bostr.30275s0178.1.p [Boechera stricta] (78) | | | | | \--------------------------------------------------- AA57G00005 [Aethionema arabicum] (63) | | --53-+ | /----- XP_010518733.1 [Tarenaya hassleriana] (71) | \------------------------99------------------------+ | \----- XP_010530072.1 [Tarenaya hassleriana] (88) | \------------------------------------------------------------- evm.model.supercontig_27.254 [Carica papaya] (160) Subtree rooted at node 216: /----- Rsa1.0_05938.1_g00001.1 [Raphanus sativus] (7) /-91-+ | \----- RrC7268_p1 [Raphanus raphanistrum] (79) /-57-+ | \---------- XP_009147822.1 [Brassica rapa] (36) | | /----- GSBRNA2T00021149001 [Brassica napus] (27) /-72-+---100---+ | | \----- GSBRNA2T00063354001 [Brassica napus] (112) | | /------------72-----------+ \--------------- XP_013592147.1 [Brassica oleracea] (127) | | | \-------------------- XP_009149055.1 [Brassica rapa] (76) | | /------------------------------ Thhalv10011379m [Eutrema salsugineum] (54) | | | | /----- Cagra.7055s0004.1.p [Capsella grandiflora] (55) | | /---100---+ | | | \----- Carubv10008830m [Capsella rubella] (69) | | | | | /-79-+ /----- Csa14g058900.1 [Camelina sativa] (61) /-71-+ /--61-+ | | /-97-+ | | | | | | | \----- Csa03g056570.1 [Camelina sativa] (77) | | | | /-89-+ \-97-+ | | | | | | \---------- Csa17g088340.1 [Camelina sativa] (114) | | | | | | | | | | | \-------------------- Bostr.26675s0117.1.p [Boechera stricta] (134) | | | \-95-+ | | /-61-+ | /----- Araha.0626s0002.1.p [Arabidopsis halleri] (81) | | | | | | | | | | \--------100--------+----- 474191 [Arabidopsis lyrata] (117) | | | | | /-80-+ \-66-+ | \----- AT1G50600.1 [Arabidopsis thaliana] (120) | | | | | | | \------------------------------------ Tp1g37420 [Thellungiella parvula] (119) | | | | | \----------------------------------------- 676748840 [Sisymbrium irio] (135) | | /-97-+ | /----- RrC21_p8 [Raphanus raphanistrum] (25) | | |---------------------100---------------------+ | | | \----- Rsa1.0_00856.1_g00007.1 [Raphanus sativus] (140) | | | --100+ | \--------------------------------------------------- GSBRNA2T00011759001 [Brassica napus] (41) | | | \-------------------------------------------------------- AA2G00159 [Aethionema arabicum] (136) | \------------------------------------------------------------- XP_010545481.1 [Tarenaya hassleriana] (97) Subtree rooted at node 246: /----- Ciclev10014845m [Citrus clementina] (2) /-100+ | \----- orange1.1g009376m [Citrus sinensis] (86) /-100+ | \---------- Neem_1639_f_9 [Azadirachta indica] (43) /--------------59--------------+ | | /----- Eucgr.A01051.1.p [Eucalyptus grandis] (42) | \---100---+ | \----- EcS761990.10 [Eucalyptus camaldulensis] (128) | | /------------------------- (170) | | | | /----- Cotton_A_04630_BGI-A2_v1.0 [Gossypium arboreum] (17) | | /-100+ | | | \----- Gh_A05G1507 [Gossypium hirsutum] (53) | | /-100+ | | | | /----- Gorai.009G184100.1 [Gossypium raimondii] (116) | /-53-+ | \-100+ | | | | \----- Gh_D05G1681 [Gossypium hirsutum] (121) | | | /-95-+ | | | | | /----- Gh_D06G2235 [Gossypium hirsutum] (47) | | | | | /-100+ | | | | | | \----- Gorai.010G249400.1 [Gossypium raimondii] (70) | | | | \-100+ | | \-100+ | /----- Cotton_A_04922_BGI-A2_v1.0 [Gossypium arboreum] (110) | /--84-+ | \-100+ | | | | \----- Gh_A06G1742 [Gossypium hirsutum] (122) | | | | | | | \-------------------- Thecc1EG030393t1 [Theobroma cacao] (66) | | | | | | /----- orange1.1g008984m [Citrus sinensis] (13) | | | /-100+ | /-100+ | | \----- Ciclev10014811m [Citrus clementina] (24) | | | \--------100--------+ | | | \---------- Neem_3816_f_1 [Azadirachta indica] (150) | | | | | | /----- Eucgr.E03895.1.p [Eucalyptus grandis] (5) | | | /-100+ | | | | \----- EcC036091.20 [Eucalyptus camaldulensis] (126) | | \-----------100-----------+ | | \---------- Eucgr.D01435.1.p [Eucalyptus grandis] (115) /-83-+ | | | | /----- Cotton_A_12101_BGI-A2_v1.0 [Gossypium arboreum] (4) | | | /-100+ | | | | \----- Gh_A04G0081 [Gossypium hirsutum] (137) | | | /-100+ | | | | | /----- Gorai.009G446100.1 [Gossypium raimondii] (33) | | | | \-100+ | | | | \----- Gh_D05G3644 [Gossypium hirsutum] (35) | | | /-100+ | |-100+ | | /----- Gorai.002G096300.1 [Gossypium raimondii] (37) | | | | | /-100+ | | | | | | \----- Gh_D01G0703 [Gossypium hirsutum] (129) | | | | \-100+ | | | /-100+ | /----- Gh_A01G0682 [Gossypium hirsutum] (56) | | | | | \-100+ | | | | | \----- Cotton_A_06569_BGI-A2_v1.0 [Gossypium arboreum] (118) | | | | | | | | /-70-+ \-------------------- Thecc1EG030733t1 [Theobroma cacao] (45) | | | | | | | | | | /---------- Neem_820_f_5 [Azadirachta indica] (21) | | | | | | | | | | \------100-----+ /----- Ciclev10007927m [Citrus clementina] (22) | | | /--76-+ \-100+ | | | | | \----- orange1.1g046067m [Citrus sinensis] (132) | | | | | /-94-+ | | | | /----- (216) | | | \-100+ \-----------75-----------+ | | | | \----- evm.model.supercontig_12.194 [Carica papaya] (133) | | | | | | | \------------------------------------ Eucgr.F03523.1.p [Eucalyptus grandis] (19) | | | | | | /------------------------- Thecc1EG002319t1 [Theobroma cacao] (18) | | | | | | | | /----- Cotton_A_32665_BGI-A2_v1.0 [Gossypium arboreum] (26) | | | | /-96-+ | | | | | \----- Gh_A07G1523 [Gossypium hirsutum] (100) | | \---------100--------+ /-99-+ | | | | \---------- Gh_D07G1671 [Gossypium hirsutum] (59) | | | /-100+ | | | | \--------------- Gorai.001G192800.1 [Gossypium raimondii] (62) | | | | | | \-95-+ /----- Cotton_A_03694_BGI-A2_v1.0 [Gossypium arboreum] (38) | | | /-100+ | | | | \----- Gh_A11G1390 [Gossypium hirsutum] (64) | | \---100---+ | | | /----- Gh_D11G1535 [Gossypium hirsutum] (49) | | \-100+ | | \----- Gorai.007G167000.1 [Gossypium raimondii] (75) | | | \--------------------------------------------------- evm.model.supercontig_136.17 [Carica papaya] (67) /-100+ | | /----- Cagra.1158s0007.1.p [Capsella grandiflora] (14) | | /-100+ | | | \----- Carubv10015685m [Capsella rubella] (32) | | /-100+ | | | | /----- Csa15g057060.1 [Camelina sativa] (40) | | | \-100+ | | /-53-+ \----- Csa19g040130.1 [Camelina sativa] (138) | | | | | | | \--------------- Bostr.19424s0023.1.p [Boechera stricta] (74) | | /-100+ | | | | /---------- AT2G04890.1 [Arabidopsis thaliana] (57) | | | | | | | | \---100---+ /----- 899299 [Arabidopsis lyrata] (98) | | /-97-+ \-100+ | | | | \----- Araha.10347s0004.1.p [Arabidopsis halleri] (123) --100+ | | | | | | \------------------------- Thhalv10002541m [Eutrema salsugineum] (92) | | | | | | /--------------- 676741272 [Sisymbrium irio] (28) | | | | | | /--96-+ | /----- GSBRNA2T00110850001 [Brassica napus] (50) | | | |------58------+ /-100+ | | | | | | \----- XP_013599360.1 [Brassica oleracea] (65) | | | | \-100+ | \--------100--------+ | \---------- XP_009102740.1 [Brassica rapa] (125) | | | | | \------------------------------ Tp3g23490 [Thellungiella parvula] (113) | | | \------------------------------------ KFK23426.1 [Arabis alpina] (82) | | /----- XP_010547219.1 [Tarenaya hassleriana] (46) \--------------------------100--------------------------+ \----- XP_010557767.1 [Tarenaya hassleriana] (110) Root part of tree: /------------------------------------------------------------------ GSBRNA2T00011921001 [Brassica napus] (1) | |------------------------------------------------------------------ XP_009129708.1 [Brassica rapa] (130) | | /----- (246) | /---------100---------+ | | \----- AA46G00013 [Aethionema arabicum] (6) | | | | /----- Carubv10026289m [Capsella rubella] (10) | | /-100-+ | | | \----- Cagra.2766s0005.1.p [Capsella grandiflora] (68) | | /-100+ | /-100-+ | | /----- Csa11g074290.1 [Camelina sativa] (30) | | | | \-100-+ | | | /-100-+ \----- Csa18g014220.1 [Camelina sativa] (83) | | | | | | | | | \---------------- Bostr.5224s0004.1.p [Boechera stricta] (99) | | | | | /-100+ \-100+ /----- 917700 [Arabidopsis lyrata] (20) | | | | /-100-+ | | | | | \----- Araha.6352s0003.1.p [Arabidopsis halleri] (141) | | | \----89----+ | | | \----------- AT5G48150.1 [Arabidopsis thaliana] (60) | | | | | \--------------------------------- Thhalv10004051m [Eutrema salsugineum] (94) | /-100-+ + | | /----- XP_013612889.1 [Brassica oleracea] (16) | | | /-100-+ | | | | \----- GSBRNA2T00109567001 [Brassica napus] (131) | | | /-100+ | | | | | /----- GSBRNA2T00009781001 [Brassica napus] (95) | | | | \-100-+ | | \---------100---------+ \----- XP_009111821.1 [Brassica rapa] (96) | | | | | | /----- Rsa1.0_00323.1_g00019.1 [Raphanus sativus] (29) | | \----100---+ | /-100+ \----- RrC177_p9 [Raphanus raphanistrum] (51) | | | | | | /----- GSBRNA2T00144444001 [Brassica napus] (31) | | | /-100-+ | | | | \----- XP_009151613.1 [Brassica rapa] (34) | | | /-97-+ | | | | | /----- XP_013593626.1 [Brassica oleracea] (58) | /-100-+ | | \-100-+ | | | | /-100-+ \----- GSBRNA2T00014243001 [Brassica napus] (140) | | | | | | | | | \----------53---------+ \---------------- RrC562_p6 [Raphanus raphanistrum] (130) | | | | | /-100+ | \---------------------- 676782258 [Sisymbrium irio] (170) | | | | | | | \------------------------------------------------- Tp2g18550 [Thellungiella parvula] (73) | | | \-100-+ \------------------------------------------------------- Rsa1.0_02123.1_g00006.1 [Raphanus sativus] (52) | | /----- XP_013621066.1 [Brassica oleracea] (12) \--------------------------100-------------------------+ \----- GSBRNA2T00120716001 [Brassica napus] (90) |