PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_27.254
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 295aa    MW: 33776.8 Da    PI: 7.1328
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_27.254genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.58.1e-102229482374
                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                   +++++++P+ kf++  aN  I e +++e r+HiiDf+i qG+Q + L++ La+Rp+gpp lRiTg+++++s+  +   l+ 
  evm.model.supercontig_27.254   2 SILFQICPYWKFAYTSANVVIKEMMQHEPRIHIIDFQIAQGTQHMMLIKDLATRPGGPPLLRITGLDDSQSNhaRGGGLHI 82 
                                   5799****************************************************************9988889999*** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   ++erL+kfAe+ +vpfef+  ++    ++ele+L+v+pg alaVn+ + lh+++desvs+ ++rd++L+lvkslsPkvv++
  evm.model.supercontig_27.254  83 VKERLSKFAESYNVPFEFHD-ATMYDCEVELEHLKVQPGYALAVNFPYVLHHMPDESVSIWNHRDRLLRLVKSLSPKVVTL 162
                                   *******************9.666777899*************************************************** PP

                          GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                   veqe+++n+++F+ rfle+l+yy+a+f+s++ + pr++++ri+ E+++++r+ivn++aceg er+erhe l+kWr+r+++a
  evm.model.supercontig_27.254 163 VEQESNTNTSPFFSRFLETLDYYAAMFESIDGGCPRDDKQRISAEQHCVARDIVNMIACEGPERIERHELLGKWRSRFMMA 243
                                   ********************************************************************************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   GF+p pls ++  +a  +l+ ++++ y +e ++g+l+l Wk r + + SaWr
  evm.model.supercontig_27.254 244 GFSPCPLSPSVRYSAGEVLKDFDKN-YALEVRDGALYLKWKMRGMATSSAWR 294
                                   ***********************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.8331275IPR005202Transcription factor GRAS
PfamPF035142.8E-992294IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSILFQICPY WKFAYTSANV VIKEMMQHEP RIHIIDFQIA QGTQHMMLIK DLATRPGGPP  60
LLRITGLDDS QSNHARGGGL HIVKERLSKF AESYNVPFEF HDATMYDCEV ELEHLKVQPG  120
YALAVNFPYV LHHMPDESVS IWNHRDRLLR LVKSLSPKVV TLVEQESNTN TSPFFSRFLE  180
TLDYYAAMFE SIDGGCPRDD KQRISAEQHC VARDIVNMIA CEGPERIERH ELLGKWRSRF  240
MMAGFSPCPL SPSVRYSAGE VLKDFDKNYA LEVRDGALYL KWKMRGMATS SAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-49429483375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_27.254
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902378.10.0scarecrow-like protein 13
SwissprotQ9M0M51e-158SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A061GH781e-176A0A061GH78_THECC; SCL domain class transcription factor
STRINGevm.model.supercontig_27.2540.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-159SCARECROW-like 13