PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12101_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 495aa    MW: 55117.1 Da    PI: 6.4496
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12101_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.98.9e-1351244941374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l+elL +cA+a++++d++l++ l+++l++++s +g+p qRl ay++e+L arla+s+s++yk+l+++e +   sse l+++++
  Cotton_A_12101_BGI-A2_v1.0 124 LKELLCACAKAIENKDMHLTDCLMTQLRQMVSVSGEPKQRLGAYMLEGLVARLASSGSSIYKSLRCKEPA---SSELLSYMHI 203
                                 5799*****************************************************************9...9********* PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 ++e++P++kf+++ aN aI+ea++ e+rvHiiDf+i qG QW++L++aLa++p+gpps+RiTg+++++s   +   le +++r
  Cotton_A_12101_BGI-A2_v1.0 204 LYEICPYFKFGYMSANGAIVEAMKDESRVHIIDFQIAQGSQWLTLIHALAAQPGGPPSIRITGIDDSTSAyaRGGGLEIVRQR 286
                                 ******************************************************************998899999******** PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L+k+Ae ++vpfef++ +a + +d++le+Lr++pgEa+aVn++++lh+++desv ++++rd++L+l kslsPkvv++veqea+
  Cotton_A_12101_BGI-A2_v1.0 287 LSKVAELCKVPFEFHA-AAISATDVQLENLRIQPGEAIAVNFAMMLHHMPDESVGTQNHRDRLLRLAKSLSPKVVTLVEQEAN 368
                                 ****************.8999************************************************************** PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 +n+++F+ rfle+++++  +f+s++++lpr+++eri+vE+++l+reivn++aceg er+erhe l+kWr+r+ +aGFkp pls
  Cotton_A_12101_BGI-A2_v1.0 369 TNTAPFVPRFLETMNHFLPIFESIDVSLPRDHKERINVEQHCLAREIVNIIACEGPERVERHELLGKWRSRFIMAGFKPFPLS 451
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 +++++++k+ll+ + +  y++e+++g l+lgW++r++v+ +aWr
  Cotton_A_12101_BGI-A2_v1.0 452 SFVNSTIKTLLQSYCD-KYTLEDKDGVLLLGWMNRAIVASCAWR 494
                                 ***************5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.52598475IPR005202Transcription factor GRAS
PfamPF035143.1E-132124494IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MEPNCWPPNL EQYCTLDSSS GLQNSSSTAS FSPNGSPVSQ PNNSCPMDLR RSPDNTCSPV  60
SDSCVTDNEH DLSHMIRQLE TAMLGTDSDN INVHAITASG RSTEVSIKSE RWKYMMEVIA  120
RGDLKELLCA CAKAIENKDM HLTDCLMTQL RQMVSVSGEP KQRLGAYMLE GLVARLASSG  180
SSIYKSLRCK EPASSELLSY MHILYEICPY FKFGYMSANG AIVEAMKDES RVHIIDFQIA  240
QGSQWLTLIH ALAAQPGGPP SIRITGIDDS TSAYARGGGL EIVRQRLSKV AELCKVPFEF  300
HAAAISATDV QLENLRIQPG EAIAVNFAMM LHHMPDESVG TQNHRDRLLR LAKSLSPKVV  360
TLVEQEANTN TAPFVPRFLE TMNHFLPIFE SIDVSLPRDH KERINVEQHC LAREIVNIIA  420
CEGPERVERH ELLGKWRSRF IMAGFKPFPL SSFVNSTIKT LLQSYCDKYT LEDKDGVLLL  480
GWMNRAIVAS CAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-631284948375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017602865.10.0PREDICTED: scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A1U8M0N00.0A0A1U8M0N0_GOSHI; scarecrow-like protein 5
STRINGGorai.009G446100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]