PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10002541m | ||||||||
Common Name | EUTSA_v10002541mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | GRAS | ||||||||
Protein Properties | Length: 423aa MW: 47897.1 Da PI: 5.6542 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 443.9 | 1.1e-135 | 62 | 422 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +L +cA+avs+++l +a++++ +l+ ++s +g+p+qRl ay++e+L arl+ ++s++yk+l+++e + s e l+++ +++ev+P++kf+++ Thhalv10002541m 62 VLAACAKAVSEDNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLSATGSSIYKSLQSREPD---SYEFLSYVYVLHEVCPYFKFGYMS 152 799*************************************************************998...9*********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 aN aI ea+++ee++HiiDf+i+qG QW+aL+qa+a+Rp+g+p++RiTg+g+ +l ++++rL k+A++++vpf+fn+ v+++ ++e+ Thhalv10002541m 153 ANGAIAEAMKEEEKIHIIDFQIGQGSQWVALIQAFAARPGGAPNIRITGIGD-----GSNLVTVRKRLDKLAKKFHVPFKFNA-VSRSSWEVEV 240 ****************************************************.....889***********************.68889999** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 e+L+v++gEal +n++++lh+l+desvs+e++rd++L++vkslsPkvv++veqe+++n+++Fl rfle+l+yy+a+f+s+++ lpr+++eri+v Thhalv10002541m 241 ENLDVRKGEALGINFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINV 334 ********************************************************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+++l+r++vn++acegaer+erhe l+kW++r+++aGF+p+pls+ + +++++ll+ ++ +gy++ee++g+l+lgW+dr Lvs +aW+ Thhalv10002541m 335 EQHCLARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIVSATIRALLKDYS-NGYEIEERDGALYLGWMDRILVSSCAWK 422 ***********************************************************9.9**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.845 | 33 | 403 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-133 | 62 | 422 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MDDVRGFRHN LREVETLMLQ PLPEISESIN DVICHEFSMW PEDADDLLLI VEAISRGDLK 60 WVLAACAKAV SEDNLLMARW CMGELRGMVS ISGEPIQRLG AYMLEGLVAR LSATGSSIYK 120 SLQSREPDSY EFLSYVYVLH EVCPYFKFGY MSANGAIAEA MKEEEKIHII DFQIGQGSQW 180 VALIQAFAAR PGGAPNIRIT GIGDGSNLVT VRKRLDKLAK KFHVPFKFNA VSRSSWEVEV 240 ENLDVRKGEA LGINFAYMLH HLPDESVSME NHRDRLLRMV KSLSPKVVTL VEQECNTNTS 300 PFLPRFLETL SYYTAMFESI DVMLPRNHKE RINVEQHCLA RDVVNIIACE GAERIERHEL 360 LGKWKSRFSM AGFEPYPLSS IVSATIRALL KDYSNGYEIE ERDGALYLGW MDRILVSSCA 420 WK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-63 | 63 | 422 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10002541m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006955 | 0.0 | AC006955.6 Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence. | |||
GenBank | AC007211 | 0.0 | AC007211.6 Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence, complete sequence. | |||
GenBank | AF210732 | 0.0 | AF210732.1 Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds. | |||
GenBank | AK175210 | 0.0 | AK175210.1 Arabidopsis thaliana mRNA for putative SCARECROW gene regulator, complete cds, clone: RAFL21-63-H23. | |||
GenBank | BT026455 | 0.0 | BT026455.1 Arabidopsis thaliana At2g04890 mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418535.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q9S7H5 | 0.0 | SCL21_ARATH; Scarecrow-like protein 21 | ||||
TrEMBL | V4MX30 | 0.0 | V4MX30_EUTSA; Uncharacterized protein | ||||
STRING | XP_006418535.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM621 | 28 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04890.1 | 0.0 | SCARECROW-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10002541m |
Entrez Gene | 18013829 |
Publications ? help Back to Top | |||
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