PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04630_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 548aa    MW: 61298.4 Da    PI: 6.4246
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04630_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS404.78.7e-1241785481374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l++ L++c +a++++d+  ++ l+  l++++s +g+p+qRl ay++e+L+arl +s+s++y+al+++e +   sse ++++++
  Cotton_A_04630_BGI-A2_v1.0 178 LKQILVACGQALHDDDMLTVTGLMHVLEKMVSVSGEPIQRLGAYVLEGLRARLESSGSNIYRALKCKEPT---SSELMSYMHI 257
                                 5789*****************************************************************9...99******** PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 ++ ++P+ kf++   N  I e +e e +vHiiDf+i qG+QW+ L+ aLa+Rp+gpps+RiTg+++++s+  +   l+ +g+r
  Cotton_A_04630_BGI-A2_v1.0 258 LFRICPYWKFAYTSGNVVIKEVLEYEGKVHIIDFQIAQGTQWMFLIAALAKRPGGPPSIRITGIDDSQSNhaRGGGLHIVGQR 340
                                 ******************************************************************9988889999******* PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L++fA++ +vpfef+  +a +  +++le+L+v+pgEalaVn+ + lh+++desvs+ ++rd++L+lvkslsPkvv+++eqe++
  Cotton_A_04630_BGI-A2_v1.0 341 LSEFARSYNVPFEFHD-AAMSGCEIQLEHLKVHPGEALAVNFPYVLHHMPDESVSIWNHRDRLLRLVKSLSPKVVTLTEQESN 422
                                 ****************.899999************************************************************ PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 +n+++F+ r le+l+yysa+f+s+++  pr++++ri+ E+++++r+ivn++aceg er+erhe  +kWr+r+++aGF+++pls
  Cotton_A_04630_BGI-A2_v1.0 423 TNTSPFFSRYLETLDYYSAMFESIDVACPRDDKQRINAEQHCVARDIVNMIACEGPERVERHELHGKWRSRFMMAGFSQYPLS 505
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 +++a+ ++ +l++++ + yr+ee++g+l+lgW +r++ ++SaWr
  Cotton_A_04630_BGI-A2_v1.0 506 SSVAMAVRDMLEEYDHK-YRLEEREGALYLGWVNRAMATFSAWR 548
                                 ***************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.965152529IPR005202Transcription factor GRAS
PfamPF035143.0E-121178548IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MRASPKHQNP ATIRRLYDQP VKENDPFYLS RIQMLDNNAC SNTGGQGTDV SFQTCKDQVF  60
TLESSMAGAG FVAYDSLSAV SISSSRSPFS PHGSQSCLSD PRPSPDNTDG SPYSGSSVVD  120
DSNKLKHKLR ELELSLLGPE SDTVDSCNGC FITGDHQVAS MASFNCAQLV DLVPKLNLKQ  180
ILVACGQALH DDDMLTVTGL MHVLEKMVSV SGEPIQRLGA YVLEGLRARL ESSGSNIYRA  240
LKCKEPTSSE LMSYMHILFR ICPYWKFAYT SGNVVIKEVL EYEGKVHIID FQIAQGTQWM  300
FLIAALAKRP GGPPSIRITG IDDSQSNHAR GGGLHIVGQR LSEFARSYNV PFEFHDAAMS  360
GCEIQLEHLK VHPGEALAVN FPYVLHHMPD ESVSIWNHRD RLLRLVKSLS PKVVTLTEQE  420
SNTNTSPFFS RYLETLDYYS AMFESIDVAC PRDDKQRINA EQHCVARDIV NMIACEGPER  480
VERHELHGKW RSRFMMAGFS QYPLSSSVAM AVRDMLEEYD HKYRLEEREG ALYLGWVNRA  540
MATFSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-561805486375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606756.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_017606757.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_017606758.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1U8JHU00.0A0A1U8JHU0_GOSHI; scarecrow-like protein 13
STRINGGorai.009G184100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13