PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA46G00013
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 470aa    MW: 52677.1 Da    PI: 6.4478
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA46G00013genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4531.9e-138994701374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L++cA+a+s++d  +a+ ++++l++++s +g+p+qRl ay++e+L a+l++s+s++y+al+  +++   s+e  ++ ++++ev+P++kf++++aN
  AA46G00013  99 LRDVLVSCAKALSENDVFMANLMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLSSSGSSIYRALNRCPKP--ASTELRSYIHILHEVCPYFKFGYMAAN 195
                 5789************************************************************777776..47888889999**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea+++e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++ +s   +   l  +g+rLak+A++++vpfefn  v+ +++++++++L v
  AA46G00013 196 GAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDVTSAyaRGGGLTIVGNRLAKLAQQFNVPFEFNS-VSVSVSEVKPKNLVV 293
                 **************************************************998899999************************.7999*********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn+++ lh+++desvs+e++rd++L++vkslsPkvv++veqe+++n+++F+ rfle+++yy+a+f+s++++lpr++++ri+vE+++l+r++v
  AA46G00013 294 RPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTSPFFPRFLETMNYYTAMFESIDVTLPRNHKQRINVEQHCLARDVV 392
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++acega+r+erhe l+kWr+r+++aGF+p pls+ +++++k+ll+++++  yr+ee++g+l+lgW++r Lv+ +aW+
  AA46G00013 393 NIIACEGADRVERHELLGKWRSRFGMAGFTPHPLSSLVNSTIKTLLKNYSD-KYRLEEREGALYLGWMHRDLVASCAWK 470
                 **************************************************5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.83973451IPR005202Transcription factor GRAS
PfamPF035146.5E-13699470IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MYKQLREDCL GSFEPLDNQL SSATALVSYN NSADEDTCGS CLTDDLNHDF KHKIKEIESV  60
MMGPDSSDLV DCIDSFDSSS CKEIDSWRST LEAISIRDLR DVLVSCAKAL SENDVFMANL  120
MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LSSSGSSIYR ALNRCPKPAS TELRSYIHIL  180
HEVCPYFKFG YMAANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI  240
TGIDDVTSAY ARGGGLTIVG NRLAKLAQQF NVPFEFNSVS VSVSEVKPKN LVVRPGEALA  300
VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTSPF FPRFLETMNY  360
YTAMFESIDV TLPRNHKQRI NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG  420
FTPHPLSSLV NSTIKTLLKN YSDKYRLEER EGALYLGWMH RDLVASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-651034708375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA46G00013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280361.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLR0G9L10.0R0G9L1_9BRAS; Uncharacterized protein
STRINGCagra.2766s0005.1.p0.0(Capsella grandiflora)
STRINGXP_006280361.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]