PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC036091.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 545aa    MW: 61330.4 Da    PI: 5.9579
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC036091.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.81.5e-1261755451374
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++++++cA+a+s+ d++ a al+  l++++s  gdp+qRl ay++e+L+a+l  s+s +y++l+++e +   sse l+ ++++++++P+ kf+++ 
  EcC036091.20 175 LKQVVIACARAISDADTSSAAALMDMLEQMVSVMGDPIQRLGAYLLEGLRAKLKFSGSIIYRKLKCKEPT---SSELLTNMQVLYQICPYWKFAYVS 268
                   57899****************************************************************9...999********************* PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   +N  I +a+e+e+r+Hi+Df+i+qG QW++++qaLa+Rp+gpp lRiTg+++++s+  +   le +g++L+k+Ae+++vpfef+  +a +l+++el+
  EcC036091.20 269 TNVIISKAMENEQRIHIVDFQITQGSQWVTFIQALAQRPGGPPLLRITGIDDSDSVhaRGAGLEIVGQKLSKIAESCNVPFEFHD-AAVSLSEVELQ 364
                   ****************************************************998888999************************.899******** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +L ++pgEalaVn+ + lh+++desvs++++rd+vL+l+kslsP+vv++veqe+++n++sF+ rf+e+++yy a+f+s+++  pr++++ri+ E+ +
  EcC036091.20 365 NLMIRPGEALAVNCPYILHHIPDESVSTQNHRDRVLRLIKSLSPRVVTLVEQESNTNTSSFFPRFIETFDYYKAMFESIDVARPRNDKQRISAEQNC 461
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   ++r+ivn+vac g er erhe ++kWr+r+++aGF+++p++ +++  +  +l++++++ yr+ee++g+l+lgW +r++ ++S+Wr
  EcC036091.20 462 VARDIVNMVACDGPERMERHELFGKWRSRFQMAGFNQLPVDASVTRAVLDMLKQYHGN-YRIEEREGALYLGWINRAMSTLSVWR 545
                   ********************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.821149526IPR005202Transcription factor GRAS
PfamPF035145.2E-124175545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MPNFQKQHSS ASVLSFYQQP PQMIKPRYLS NYEQIDGGMN RGLAGQGFDS SFQNYDEQIF  60
TLDSSTSASG LASYDSGSNI STSPDGTPFV KSFHSDQHLS VENVSGSPLS VSSIADYGND  120
ELRDKLRELE MSLLGPESDI CDYQNSCFKN SSHNIFPTSM WYSSQVRDMM PKPDLKQVVI  180
ACARAISDAD TSSAAALMDM LEQMVSVMGD PIQRLGAYLL EGLRAKLKFS GSIIYRKLKC  240
KEPTSSELLT NMQVLYQICP YWKFAYVSTN VIISKAMENE QRIHIVDFQI TQGSQWVTFI  300
QALAQRPGGP PLLRITGIDD SDSVHARGAG LEIVGQKLSK IAESCNVPFE FHDAAVSLSE  360
VELQNLMIRP GEALAVNCPY ILHHIPDESV STQNHRDRVL RLIKSLSPRV VTLVEQESNT  420
NTSSFFPRFI ETFDYYKAMF ESIDVARPRN DKQRISAEQN CVARDIVNMV ACDGPERMER  480
HELFGKWRSR FQMAGFNQLP VDASVTRAVL DMLKQYHGNY RIEEREGALY LGWINRAMST  540
LSVWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5318254425377Protein SCARECROW
5b3h_D1e-5318254425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057817.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A059C9U60.0A0A059C9U6_EUCGR; Uncharacterized protein
STRINGXP_010057817.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13