PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676741272
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 405aa    MW: 45488.4 Da    PI: 5.8749
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676741272genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.38.1e-136454054374
       GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                +L +cA+avs+++l +a++++ +ls ++s +g+p+qRl ay++e+L arla ++s++yk+l+++e +   s e l+++ +++e++P++kf+++ aN aI 
  676741272  45 VLAACAKAVSEDNLLMARWCMGQLSGMVSISGEPIQRLGAYMLEGLVARLAATGSSIYKSLQSREPE---SYEFLSYVYFLHEICPYFKFGYMSANGAIA 141
                799**************************************************************99...9***************************** PP

       GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203
                ea++ eer+HiiDf+i+qG QW aL+qa+a+Rp+g+p++RiTg+g+       +l ++++rL+k+A++++vpf+fn+ v+++  ++e+e+L+v++gEal 
  676741272 142 EAMKDEERIHIIDFQIGQGSQWTALIQAFAARPRGAPNIRITGIGE-----GSNLVAVRKRLEKLAKKFDVPFKFNA-VSRSSCEVEVEDLDVRKGEALG 235
                **********************************************.....889***********************.79999***************** PP

       GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                Vn++++lh+l+desvs++++rd++L++vkslsPkvv++veqe+++n+++Fl rfle+l+yy+a+f+s+++ lpr+++eri+vE+++l+r++vn++acega
  676741272 236 VNFAYMLHHLPDESVSMDNHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINVEQHCLARDVVNIIACEGA 335
                **************************************************************************************************** PP

       GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                er+erhe l+kW++r+++aGF+p+pls+ + +++++ll+ ++ +gy +ee++g+l+lgW++r Lvs +aW+
  676741272 336 ERIERHELLGKWKSRFSMAGFQPYPLSSVVSATIRALLKDYS-NGYGIEERDGALYLGWMGRILVSSCAWK 405
                *****************************************9.9**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.26716386IPR005202Transcription factor GRAS
PfamPF035142.8E-13345405IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MLQPLPEIAE TINDAVCHEL SMWPEDADDL LLIVDAISRG DLKLVLAACA KAVSEDNLLM  60
ARWCMGQLSG MVSISGEPIQ RLGAYMLEGL VARLAATGSS IYKSLQSREP ESYEFLSYVY  120
FLHEICPYFK FGYMSANGAI AEAMKDEERI HIIDFQIGQG SQWTALIQAF AARPRGAPNI  180
RITGIGEGSN LVAVRKRLEK LAKKFDVPFK FNAVSRSSCE VEVEDLDVRK GEALGVNFAY  240
MLHHLPDESV SMDNHRDRLL RMVKSLSPKV VTLVEQECNT NTSPFLPRFL ETLSYYTAMF  300
ESIDVMLPRN HKERINVEQH CLARDVVNII ACEGAERIER HELLGKWKSR FSMAGFQPYP  360
LSSVVSATIR ALLKDYSNGY GIEERDGALY LGWMGRILVS SCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-63464058375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676741272
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069550.0AC006955.6 Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence.
GenBankAC0072110.0AC007211.6 Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence, complete sequence.
GenBankAF2107320.0AF210732.1 Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds.
GenBankAK1752100.0AK175210.1 Arabidopsis thaliana mRNA for putative SCARECROW gene regulator, complete cds, clone: RAFL21-63-H23.
GenBankBT0264550.0BT026455.1 Arabidopsis thaliana At2g04890 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418535.10.0scarecrow-like protein 21
SwissprotQ9S7H50.0SCL21_ARATH; Scarecrow-like protein 21
TrEMBLV4MX300.0V4MX30_EUTSA; Uncharacterized protein
STRINGXP_006418535.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.10.0SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]