PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_12.194
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 542aa    MW: 60549.4 Da    PI: 5.6648
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_12.194genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.17.4e-1381715411374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l+e+L++cA+a++++d+ ++++l+++l++++s  g+p+qRl ay++e+L arla+s+s++ykal+++e s   s+e l+++
  evm.model.supercontig_12.194 171 LKEVLYACAKAIENNDMIMTEWLMTELRKMVSVFGEPVQRLGAYMLEGLVARLASSGSSIYKALKCKEPS---SVELLSYM 248
                                   5789*****************************************************************9...9******* PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                   +l++ev+P++kf++l aN aI eav++e+ vHiiDf+i qG+QW++L+qaLasRp+gpp+lRiTg+++++s   ++  le 
  evm.model.supercontig_12.194 249 HLLYEVCPYFKFGYLSANGAIAEAVKNESNVHIIDFQIAQGTQWITLIQALASRPGGPPRLRITGIDDSTSAyaRAGGLEL 329
                                   ********************************************************************998899999**** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   +g rL+++Ae+++vpfef++ +a + ++++le+L v+pgEa+aVn++l+lh+++desv ++++rd++L++vk+lsPkvv++
  evm.model.supercontig_12.194 330 VGLRLSRLAESCKVPFEFHA-AAISGTEVQLEDLGVQPGEAIAVNFALMLHHMPDESVGTQNHRDRLLRMVKGLSPKVVTL 409
                                   ********************.8999******************************************************** PP

                          GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                   ve+ea++n++ Fl rf+e++++y  +f+s++++lpre++eri+vE+++l+reivnv+acegaer+erhe l+kW++r+ +a
  evm.model.supercontig_12.194 410 VEEEANTNTALFLPRFVETMNHYLPIFESMDVSLPREHKERISVEQHCLAREIVNVIACEGAERVERHEYLGKWHARFLMA 490
                                   ********************************************************************************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   GF+p pls+++++++k+ll++++++ y++ee++g+l+lgW+++pL++ +aWr
  evm.model.supercontig_12.194 491 GFTPHPLSHYVNATIKMLLENYSEK-YTLEERDGALFLGWNNQPLITSCAWR 541
                                   ***********************65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.871145522IPR005202Transcription factor GRAS
PfamPF035142.5E-135171541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MQTSQKNRIS DGSIKLFNQH VKEVERYIWP LTQNKDHQTS SDDGSNGVHN STQTFQQYCT  60
LESSSGYTAH NSPSTASFSP ERSQISQPNS QSYQSEPHHS PDNVYSSPVS GSCVTDNESN  120
LRHILRELET AMLGPDLDNF DIGLAASPGP DTNSFEVEKW NMMEIISRGD LKEVLYACAK  180
AIENNDMIMT EWLMTELRKM VSVFGEPVQR LGAYMLEGLV ARLASSGSSI YKALKCKEPS  240
SVELLSYMHL LYEVCPYFKF GYLSANGAIA EAVKNESNVH IIDFQIAQGT QWITLIQALA  300
SRPGGPPRLR ITGIDDSTSA YARAGGLELV GLRLSRLAES CKVPFEFHAA AISGTEVQLE  360
DLGVQPGEAI AVNFALMLHH MPDESVGTQN HRDRLLRMVK GLSPKVVTLV EEEANTNTAL  420
FLPRFVETMN HYLPIFESMD VSLPREHKER ISVEQHCLAR EIVNVIACEG AERVERHEYL  480
GKWHARFLMA GFTPHPLSHY VNATIKMLLE NYSEKYTLEE RDGALFLGWN NQPLITSCAW  540
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-651755418375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_12.194
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905881.10.0scarecrow-like protein 5
RefseqXP_021905882.10.0scarecrow-like protein 5
RefseqXP_021905883.10.0scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A061F5H80.0A0A061F5H8_THECC; Scarecrow-like transcription factor PAT1 isoform 1
STRINGevm.model.supercontig_12.1940.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]