PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0703
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 539aa    MW: 59893.2 Da    PI: 5.3598
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0703genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.29.2e-1361685381374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+elL +cA+a++s+d+ +++ l+a+l++++s +g+pmqRl ay++e+L arla+s+s++ykal+++e +   s e l+++++++e++P++kf+++ a
  Gh_D01G0703 168 LKELLCTCAKAIESNDMYMTDCLIAQLRQMVSVSGEPMQRLGAYLLEGLVARLASSGSSIYKALRCKEPA---SPELLSYMHILYEICPYFKFGYMSA 262
                  5799*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea+++e+rvHiiDf+i qG QW++L++aLa Rp+gpps+RiTg+++p+s   +   le +g+rL+k+Ae+++vpfef++ +a + ++++le+L
  Gh_D01G0703 263 NGAIAEAMKEESRVHIIDFQIAQGSQWLTLINALAGRPGGPPSIRITGIDDPTSAfaRGGGLEIVGQRLRKLAESCKVPFEFHA-AAISGTEVQLENL 359
                  *****************************************************999999*************************.8999********* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   ++pgEa+aVn++++lh+++desv+++++rd++L+l kslsPkvv++ve+ea++n+++F  rfle++ y+s++f+s++++lpre++eri+vE+++l+r
  Gh_D01G0703 360 GIQPGEAIAVNFAMMLHHMPDESVDTQNHRDRLLRLAKSLSPKVVTLVEHEANTNTAPFIPRFLETMGYFSSIFESIDVSLPREHKERINVEQHCLAR 457
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  eivn++aceg+er+er e ++kWr+r+ +aGF+p pls ++++++k+ll+ + +  y++ee++g l+lgW+dr++++ +aWr
  Gh_D01G0703 458 EIVNIIACEGQERVERYELFGKWRSRFIMAGFTPSPLSPFVNATIKTLLQSYCD-KYTLEERDGVLYLGWMDRAIIASCAWR 538
                  *****************************************************5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.693142519IPR005202Transcription factor GRAS
PfamPF035143.2E-133168538IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MQTSQKHKIT GKCIDWPVQE LESYCWPPNQ SLEPYQSGSD DGSNSVQHSV PNLERYCTLD  60
SSSSMQNSSS TASFSPDGSP VSQQNYTYPL DLHHSPENTC ASPISGSCVI DNENDLGLMI  120
RQLETAMLGI DSGDLDLHAI AASGRATKVS VEAERWKYMK EMIARGDLKE LLCTCAKAIE  180
SNDMYMTDCL IAQLRQMVSV SGEPMQRLGA YLLEGLVARL ASSGSSIYKA LRCKEPASPE  240
LLSYMHILYE ICPYFKFGYM SANGAIAEAM KEESRVHIID FQIAQGSQWL TLINALAGRP  300
GGPPSIRITG IDDPTSAFAR GGGLEIVGQR LRKLAESCKV PFEFHAAAIS GTEVQLENLG  360
IQPGEAIAVN FAMMLHHMPD ESVDTQNHRD RLLRLAKSLS PKVVTLVEHE ANTNTAPFIP  420
RFLETMGYFS SIFESIDVSL PREHKERINV EQHCLAREIV NIIACEGQER VERYELFGKW  480
RSRFIMAGFT PSPLSPFVNA TIKTLLQSYC DKYTLEERDG VLYLGWMDRA IIASCAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-651725388375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016707293.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1U8L1Q80.0A0A1U8L1Q8_GOSHI; scarecrow-like transcription factor PAT1
STRINGGorai.002G096300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]