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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.3356s0014.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
GRAS |
| Protein Properties |
Length: 533aa MW: 58562.2 Da PI: 5.6223 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.3356s0014.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 414.7 | 8.5e-127 | 155 | 525 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
l+e+L+e+A+av++gd++ a +L l++++s +g+p+qRl +y++e+L+arl +s+s++ykal+++e + e ++++ +++e++P+
Cagra.3356s0014.1.p 155 LKEVLVEAARAVADGDFATAYGFLDVLEQMVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKALKCNEPT---GRELMSYMGVLYEICPY 241
5789*****************************************************************9...99999999********* PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
kf++ taN aIlea++ge+rvHiiDf+i qG Q++ L+q+L +Rp+gpp lR+Tgv++++s+ + l+ +gerL+kfA+++gvpfef
Cagra.3356s0014.1.p 242 WKFAYTTANAAILEAIAGETRVHIIDFQIAQGSQYLFLIQELGKRPGGPPLLRVTGVDDSQSTyaRGGGLSLVGERLTKFAQSCGVPFEF 331
***********************************************************999999999********************** PP
GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
+ + + +++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+kslsPk+v++veqe+++n+++Fl rf+e+l+yy+a+f
Cagra.3356s0014.1.p 332 HD-AIMSGCKVQREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMF 420
**.7888999******************************************************************************** PP
GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
+s++a pr++++ri+ E+++++r+ivn++ace++er+erhe l+kWr r+++aGF+ p+s++aa a+ +l+ ++++ y++ ++g+l
Cagra.3356s0014.1.p 421 ESIDAARPRDDKQRISAEQHCVARDIVNMIACEESERVERHEVLGKWRVRMMMAGFTGWPISTSAAFAASEMLKSYDKN-YKLGGNEGAL 509
*****************************************************************************66.********** PP
GRAS 359 vlgWkdrpLvsvSaWr 374
+l Wk+rp+ ++SaW+
Cagra.3356s0014.1.p 510 YLLWKRRPMATCSAWK 525
***************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 533 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQV YCSPQFQAID NNGFSDIPSK ENFFTLESST ASGSLPSYDS 60
PSVSITSGRS PFSPQGSQSC ISDLHPSPDN VYGSPLSGTS SLAYDEAGVK SKIRELEVSL 120
LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV 180
LEQMVSVSGS PIQRLGTYMA EGLRARLEGS GSNIYKALKC NEPTGRELMS YMGVLYEICP 240
YWKFAYTTAN AAILEAIAGE TRVHIIDFQI AQGSQYLFLI QELGKRPGGP PLLRVTGVDD 300
SQSTYARGGG LSLVGERLTK FAQSCGVPFE FHDAIMSGCK VQREHLGVEP GFAVVVNFPY 360
VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT NTSPFLSRFV ETLDYYTAMF 420
ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGKWRVR MMMAGFTGWP 480
ISTSAAFAAS EMLKSYDKNY KLGGNEGALY LLWKRRPMAT CSAWKPTLNQ IG*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK226549 | 0.0 | AK226549.1 Arabidopsis thaliana mRNA for scarecrow-like 13, clone: RAFL07-11-B03. |
