PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 899299
Common NameARALYDRAFT_899299
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 423aa    MW: 47659.1 Da    PI: 5.8543
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
899299genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.71.6e-136624224374
    GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleav 106
             +L++cA+avs+++l +a++++ +l+ ++s +g+p+qRl ay++e+L arla s+s++yk+l+++e +   s e l+++ +++ev+P++kf+++ aN aI ea+
  899299  62 VLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPE---SYEFLSYVYVLHEVCPYFKFGYMSANGAIAEAM 161
             79****************************************************************9...9******************************** PP

    GRAS 107 egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlq 209
             + eer+HiiDf+i+qG QW++L+qa+a+Rp+g+p++RiTgvg+        l ++++rL+k+A++++vpf+fn+ v++   ++e+e+L+v +gEal Vn++++
  899299 162 KDEERIHIIDFQIGQGSQWISLIQAFAARPGGAPNIRITGVGD-----VSVLVTVKKRLEKLAKKFDVPFRFNA-VSRPSCEVEMENLDVLEGEALGVNFAYM 258
             *******************************************.....89************************.799************************* PP

    GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312
             lh+l+desvs+e++rd++L++vkslsPkvv++veqe+++n+++Fl rfle+l+yy+a+f+s+++ lpr+++eri++E+++l+r++vn++acegaer+erhe l
  899299 259 LHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCLARDVVNIIACEGAERIERHELL 361
             ******************************************************************************************************* PP

    GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
             +kW++r+++aGF+p+pls+ + +++++llr ++ +gy +ee++g+l+lgW+dr Lvs +aW+
  899299 362 GKWKSRFSMAGFEPYPLSSIISATIRALLRDYS-NGYAIEERDGALYLGWMDRILVSSCAWK 422
             ********************************9.9**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.53433403IPR005202Transcription factor GRAS
PfamPF035145.4E-13462422IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MENVRGSRHN LREVETIMLK PLPDIAESID DAICHKLSMW PEEANDLLLI VEAISRGDLK  60
LVLVACAKAV SENNLLMARW CMGELRGMVS ISGEPIQRLG AYMLEGLVAR LAASGSSIYK  120
SLQSREPESY EFLSYVYVLH EVCPYFKFGY MSANGAIAEA MKDEERIHII DFQIGQGSQW  180
ISLIQAFAAR PGGAPNIRIT GVGDVSVLVT VKKRLEKLAK KFDVPFRFNA VSRPSCEVEM  240
ENLDVLEGEA LGVNFAYMLH HLPDESVSME NHRDRLLRMV KSLSPKVVTL VEQECNTNTS  300
PFLPRFLETL SYYTAMFESI DVMLPRNHKE RINIEQHCLA RDVVNIIACE GAERIERHEL  360
LGKWKSRFSM AGFEPYPLSS IISATIRALL RDYSNGYAIE ERDGALYLGW MDRILVSSCA  420
WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-62634228375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap899299
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069550.0AC006955.6 Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence.
GenBankAC0072110.0AC007211.6 Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence, complete sequence.
GenBankAF2107320.0AF210732.1 Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds.
GenBankAK1752100.0AK175210.1 Arabidopsis thaliana mRNA for putative SCARECROW gene regulator, complete cds, clone: RAFL21-63-H23.
GenBankBT0264550.0BT026455.1 Arabidopsis thaliana At2g04890 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885778.10.0scarecrow-like protein 21
SwissprotQ9S7H50.0SCL21_ARATH; Scarecrow-like protein 21
TrEMBLD7L8K00.0D7L8K0_ARALL; Uncharacterized protein
STRINGscaffold_303269.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.10.0SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]