PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10014845m | ||||||||
Common Name | CICLE_v10014845mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GRAS | ||||||||
Protein Properties | Length: 537aa MW: 59838.7 Da PI: 5.9702 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 454.6 | 6e-139 | 166 | 536 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l+++L++cA+avs+++l la++l+ +l++++s +g+p+qRl ay++e+L arl++s+s+++k+l+++e + ss+ l+++++++ev+P++kf+ Ciclev10014845m 166 LKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSICKSLRCKEPA---SSDLLSYMHILYEVCPYFKFG 256 689******************************************************************9...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg++++ s + l +g+rL+k+Ae+++vpf+f++ + + Ciclev10014845m 257 YMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAyaRGGGLGIVGKRLSKLAEQFRVPFDFHA-ANMSG 349 *******************************************************888788999************************.78899 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 d++le+L v+pgEa+aVn++++lh+++desvs+e++rd++L lvk+lsPkvv++veqe+++n++ F rfleal+yy+a+f+s++++l+r+++ Ciclev10014845m 350 YDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHK 443 9********************************************************************************************* PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 eri++E+++l+r++vn++aceg er+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll+++ ++ yr++e++g+l+lgW++r Lv+ +aWr Ciclev10014845m 444 ERINIEQHCLARDVVNIIACEGPERIERHELLGKWRSRFTMAGFRPYPLSSVVNATIKTLLENYCNR-YRLQERDGALFLGWMNRDLVASCAWR 536 *****************************************************************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 70.306 | 140 | 517 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-136 | 166 | 536 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MSGRLYYQPI QEIEPYCLPQ FQTVDHHLQY NDGGKGAHLS LQNSYEQYCT LESSSANGSY 60 TIYNSPSTVT FSPNGSPMSQ QESQSYPPDL HHSPDNAYGS PMSASCITND ASDLKHKLRE 120 LESVMLGPDS DIIDGIDSTY QSGTNKGSPE MDSGRQIIGA IAKGDLKHVL IACAKAVSEN 180 ELLLANWLMY ELRQMVSVSG EPIQRLGAYM LEGLVARLNS SGSSICKSLR CKEPASSDLL 240 SYMHILYEVC PYFKFGYMSA NGAIAEAMKD EDRVHIIDFQ IGQGSQWITL IQAFAARPGG 300 PPHIRITGID DSMSAYARGG GLGIVGKRLS KLAEQFRVPF DFHAANMSGY DVQLENLGVQ 360 PGEAVAVNFA FMLHHVPDES VSTENYRDRL LMLVKRLSPK VVTLVEQESN TNTAAFYPRF 420 LEALNYYTAM FESIDVNLAR DHKERINIEQ HCLARDVVNI IACEGPERIE RHELLGKWRS 480 RFTMAGFRPY PLSSVVNATI KTLLENYCNR YRLQERDGAL FLGWMNRDLV ASCAWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-63 | 173 | 535 | 26 | 378 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447746.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_006469518.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A2H5PLA7 | 0.0 | A0A2H5PLA7_CITUN; Uncharacterized protein | ||||
TrEMBL | V4UFB6 | 0.0 | V4UFB6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006469518.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006447746.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM621 | 28 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10014845m |
Entrez Gene | 18051148 |
Publications ? help Back to Top | |||
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