PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G446100.1 | ||||||||
Common Name | B456_009G446100, LOC105768519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 509aa MW: 56575.7 Da PI: 6.3439 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 439.7 | 2.1e-134 | 137 | 507 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l+elL +cA+a++++d++l++ l+++l++++s +g+p qRl ay++e+L arla+s+s++yk+l+++e + sse l+++++++e++P++ Gorai.009G446100.1 137 LKELLCACAKAIENKDMHLTDCLMTQLRQMVSVSGEPKQRLGAYMLEGLVARLASSGSSIYKSLRCKEPA---SSELLSYMHILYEICPYF 224 5799*****************************************************************9...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 kf+++ aN aI ea++ e+rvHiiDf+i qG QW++L+ aLa+Rp+gpps+RiTg+++++s + le +++rL+k+Ae ++vpfef++ Gorai.009G446100.1 225 KFGYMSANGAIAEAMKDESRVHIIDFQIAQGSQWLTLIPALAARPGGPPSIRITGIDDSTSAyaRGGGLEIVRQRLSKVAELCKVPFEFHA 315 **********************************************************998899999************************ PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a + +d+++e+Lr++pgEa+aVn++++lh+++desv +++rd++L+l kslsPkvv++veqea++n+++F+ rfle+++++ +f+s+ Gorai.009G446100.1 316 -AAISATDVQFENLRIQPGEAVAVNFAMMLHHMPDESVGAQNHRDRLLRLAKSLSPKVVTLVEQEANTNTAPFVPRFLETMNHFLPIFESI 405 .8999************************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +++lpr+++eri+vE+++l+reivn++aceg er+erhe l+kWr+r+ +aGFkp pls+++++++k+ll+ + + y++++++g l+lgW Gorai.009G446100.1 406 DVSLPRDHKERINVEQHCLAREIVNIIACEGPERVERHELLGKWRSRFIMAGFKPFPLSSFVNSTIKSLLQSYCD-KYTLDDKDGVLLLGW 495 **************************************************************************5.5************** PP GRAS 363 kdrpLvsvSaWr 374 ++r++v+ +aWr Gorai.009G446100.1 496 MNRAIVASCAWR 507 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.525 | 111 | 488 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.1E-132 | 137 | 507 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MQTSQNHKVT VQEMESNCWP PKLEQYCTLD SSSGVQNSSS TASFSPNGSP VSQPNNSCPM 60 DLRRSPDNTC SPVSNSCVTD NEHDLSHMIR QLETAMLGTD SDNIDVHAIM ASGRSTEVSI 120 ESERWKYMME MIAQGDLKEL LCACAKAIEN KDMHLTDCLM TQLRQMVSVS GEPKQRLGAY 180 MLEGLVARLA SSGSSIYKSL RCKEPASSEL LSYMHILYEI CPYFKFGYMS ANGAIAEAMK 240 DESRVHIIDF QIAQGSQWLT LIPALAARPG GPPSIRITGI DDSTSAYARG GGLEIVRQRL 300 SKVAELCKVP FEFHAAAISA TDVQFENLRI QPGEAVAVNF AMMLHHMPDE SVGAQNHRDR 360 LLRLAKSLSP KVVTLVEQEA NTNTAPFVPR FLETMNHFLP IFESIDVSLP RDHKERINVE 420 QHCLAREIVN IIACEGPERV ERHELLGKWR SRFIMAGFKP FPLSSFVNST IKSLLQSYCD 480 KYTLDDKDGV LLLGWMNRAI VASCAWRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-62 | 141 | 507 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012443928.1 | 0.0 | PREDICTED: scarecrow-like protein 5 | ||||
Refseq | XP_012443929.1 | 0.0 | PREDICTED: scarecrow-like protein 5 | ||||
Swissprot | Q8H125 | 0.0 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | A0A0D2U4T0 | 0.0 | A0A0D2U4T0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G446100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM621 | 28 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 0.0 | scarecrow-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G446100.1 |
Entrez Gene | 105768519 |
Publications ? help Back to Top | |||
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