PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS761990.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 525aa    MW: 58560.7 Da    PI: 6.6372
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS761990.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.77.5e-1371565252374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   +++L++ A+avs++dl  a++l+ +l+ ++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   sse l+++++++ev+P++kf+++ a
  EcS761990.10 156 KRVLIASAKAVSENDLWTANWLMDELRGMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPE---SSELLSYMHILYEVCPYFKFGYMSA 249
                   789*****************************************************************9...9************************ PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   N aI +a+++e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   le +g+rL+k+A+  +vpfef++ ++   +dl l++
  EcS761990.10 250 NGAIADAMKNENRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGFDDSTSAyaRGGGLEIVGKRLTKLAQLYKVPFEFHA-ASIPGSDLLLHH 345
                   ***************************************************998899999************************.788999999*** PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                   L+v+pgEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ Fl rf+ea++yy+a+f+s++++l+re++eri+vE+++l
  EcS761990.10 346 LDVRPGEALAVNFAFMLHHMPDESVSIQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFLPRFIEAMDYYAAMFESIDVTLHREHKERINVEQHCL 442
                   ************************************************************************************************* PP

          GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +r++vn++acegaer+erhe l+kWr r+ +aGF+p pls+ ++ ++k+ll++++ + yr+ee++g+l+lgW++r Lv+ +aW+
  EcS761990.10 443 ARDVVNIIACEGAERVERHELLGKWRLRFAMAGFTPFPLSSLVNGTIKTLLENYSHR-YRLEERDGALYLGWMNRDLVASCAWK 525
                   *******************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.093129506IPR005202Transcription factor GRAS
PfamPF035142.6E-134156525IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MQTSQKKSHL SMSNKICYQS ALEIGTYCLP QFHTLDCYPS YCTLESSSAS GGYAIYNPPS  60
NISFSSDGSP VSLQDSVSYP PDVLHSPDNT YASSISGSCV TDDANDFLHK LRELENVMLG  120
PDSDISINYD RSFPKGIHVA SPGSKLKDAI ERKDLKRVLI ASAKAVSEND LWTANWLMDE  180
LRGMVSVSGE PIQRLGAYML EGLVARLASS GSSIYKALRC KEPESSELLS YMHILYEVCP  240
YFKFGYMSAN GAIADAMKNE NRVHIIDFQI GQGSQWITLI QAFAARPGGP PHIRITGFDD  300
STSAYARGGG LEIVGKRLTK LAQLYKVPFE FHAASIPGSD LLLHHLDVRP GEALAVNFAF  360
MLHHMPDESV SIQNHRDRLL RLVKSLSPKV VTLVEQESNT NTAAFLPRFI EAMDYYAAMF  420
ESIDVTLHRE HKERINVEQH CLARDVVNII ACEGAERVER HELLGKWRLR FAMAGFTPFP  480
LSSLVNGTIK TLLENYSHRY RLEERDGALY LGWMNRDLVA SCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-601555255375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045926.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010045932.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010045939.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010045945.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A059DD550.0A0A059DD55_EUCGR; Uncharacterized protein
STRINGXP_010045926.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]