PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00021149001 | ||||||||
Common Name | GSBRNA2T00021149001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRAS | ||||||||
Protein Properties | Length: 421aa MW: 46682.5 Da PI: 6.608 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 394.4 | 1.2e-120 | 100 | 420 | 51 | 374 |
GRAS 51 arlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp 140 + l++s+s++ykal++++ + e l+++++++e++P++kf++ aN aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp GSBRNA2T00021149001 100 TELTSSGSSIYKALRCKDPT---GPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPP 186 578999*************9...9****************************************************************** PP GRAS 141 slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevL 228 ++RiTg+++p+s+ ++ le +g+rL k+Ae +gvpfef+ +a ++++e+e+L v++gEalaVn+ l lh+++desv++e++rd++L GSBRNA2T00021149001 187 RVRITGIDDPRSSfaRQGGLELVGQRLGKLAEMCGVPFEFHG-AALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLL 275 **********999999**************************.899******************************************** PP GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318 +lvk+lsP+vv++veqea++n+++Fl rf+e++++y a+f+s+++kl+r+++eri+vE+++l+re+vn++aceg er+erhe l+kWr+r GSBRNA2T00021149001 276 RLVKRLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSR 365 ****************************************************************************************** PP GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++aGFkp+pls+++++++k ll+ ++++ y++ee++g+l+lgWk++pL++ +aWr GSBRNA2T00021149001 366 FHMAGFKPYPLSSYVNATIKGLLESYSEK-YTLEERDGALYLGWKNQPLITSCAWR 420 ***************************65.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.613 | 24 | 401 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-118 | 100 | 420 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MEATQKHTIQ DGSSMFYHQP SVKQMDISVQ TFDSYCTLES SSGTKSHPCP NNNITSSTTS 60 FSSNGSPVSH SNTNNNTSHL SPDNNNSPLS GSSATNNNET ELTSSGSSIY KALRCKDPTG 120 PELLTYMHIL YEACPYFKFG YESANGAIAE AVKNESFVHI IDFQISQGGQ WVSLIRALGA 180 RPGGPPRVRI TGIDDPRSSF ARQGGLELVG QRLGKLAEMC GVPFEFHGAA LCCTEVEIEK 240 LGVRNGEALA VNFPLVLHHM PDESVTVENH RDRLLRLVKR LSPNVVTLVE QEANTNTAPF 300 LPRFVETMNH YLAVFESIDV KLARDHKERI NVEQHCLARE VVNLIACEGV EREERHEPLG 360 KWRSRFHMAG FKPYPLSSYV NATIKGLLES YSEKYTLEER DGALYLGWKN QPLITSCAWR 420 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-58 | 122 | 420 | 75 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.3669 | 0.0 | root| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00021149001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352724 | 0.0 | AK352724.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-J19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592147.1 | 0.0 | PREDICTED: scarecrow-like protein 5 isoform X1 | ||||
Swissprot | Q8H125 | 0.0 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | A0A078GCM1 | 0.0 | A0A078GCM1_BRANA; BnaA06g02700D protein | ||||
STRING | Bo6g022330.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM621 | 28 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 0.0 | scarecrow-like 5 |
Publications ? help Back to Top | |||
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