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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_00288.1_g00010.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
GRAS |
| Protein Properties |
Length: 526aa MW: 58084.8 Da PI: 6.2024 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00288.1_g00010.1 | genome | RGD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 386.7 | 2.7e-118 | 148 | 519 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86
l+e+L+e A+av++gd++ a ++ l++++s +g+p+qRl ay++e+L+arl +s+ ++y+al+++e + e ++++ +++e
Rsa1.0_00288.1_g00010.1 148 LKEVLMEGARAVADGDFATACGFIDVLEQMVSVSGTPVQRLGAYMAEGLRARLEGSGGNIYRALKCNEPT---GRELMSYMGVLYE 230
5789*****************************************************************9...99999999***** PP
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
++P+ kf++ + N aIlea++g++++H+iDf+i qG Q++ L+++La+Rp+g+p lR+Tgv++++s + l +ge+Lak+Ae
Rsa1.0_00288.1_g00010.1 231 ICPYWKFAYTASNAAILEATAGDSKIHVIDFQIAQGSQYMFLIHELAKRPGGAPLLRVTGVDDSQSRyaRGGGLGLVGEKLAKMAE 316
***************************************************************999899999************** PP
GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls.PkvvvvveqeadhnsesFle 255
++gvpfef+ ++ + +++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl P++v++veqe+++n+++Fl
Rsa1.0_00288.1_g00010.1 317 SCGVPFEFHD-AVMSGCKVHREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLGpPRLVTLVEQESNTNTSPFLS 401
**********.788899999********************************************8469****************** PP
GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
rf+e+l+yy+a+f+s++a pr++++ri+ E+++++r+ivn++ace++er+erhe l+kWr r+++aGF p+s +aa a+ +l
Rsa1.0_00288.1_g00010.1 402 RFAETLDYYTAMFESIDAARPRDDRQRISAEQQCVARDIVNMIACEERERVERHEVLGKWRVRMMMAGFVGWPVSRSAAFAASEML 487
************************************************************************************** PP
GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ ++++ y++ ++g+l+l Wk+rp+ ++SaW+
Rsa1.0_00288.1_g00010.1 488 KGYDKN-YKLGGSEGALYLFWKRRPMATCSAWK 519
****66.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 526 aa
Download sequence Send
to blast |
MQTSQKHHTA AGLHMLYPQP HCSPQFQMID NNNNNGSSKE SFFTLESSGP LPSYDSPSVS 60
ITSARTPFSP HSCISDPHPS PENVYGSPLS AASSYVYDEA GIKSKIRELE DSLLSGDPKV 120
EEYSGFSPAA GKSWNWDELL ALTPQLDLKE VLMEGARAVA DGDFATACGF IDVLEQMVSV 180
SGTPVQRLGA YMAEGLRARL EGSGGNIYRA LKCNEPTGRE LMSYMGVLYE ICPYWKFAYT 240
ASNAAILEAT AGDSKIHVID FQIAQGSQYM FLIHELAKRP GGAPLLRVTG VDDSQSRYAR 300
GGGLGLVGEK LAKMAESCGV PFEFHDAVMS GCKVHREHLG VEPGFAVVVN FPYVLHHMPD 360
ESVSVENHRD RLLHLIKSLG PPRLVTLVEQ ESNTNTSPFL SRFAETLDYY TAMFESIDAA 420
RPRDDRQRIS AEQQCVARDI VNMIACEERE RVERHEVLGK WRVRMMMAGF VGWPVSRSAA 480
FAASEMLKGY DKNYKLGGSE GALYLFWKRR PMATCSAWKP NPNQIV
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
