PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA2G00159
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 518aa    MW: 57710.4 Da    PI: 5.8754
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA2G00159genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS438.16.5e-1341505183374
       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                 +L ecA+a++++d +++++l+a+l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +     e l+++++++e++P++kf++  aN aI
  AA2G00159 150 GTLCECAKAIENNDIAMTDWLIAQLQTMVSVSGEPIQRLGAYMLEGLIARLASSGSSIYKALKCKEPT---GPELLTYMHILYEACPYFKFGYESANGAI 246
                689****************************************************************9...9**************************** PP

       GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                 eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+  ++  le +g+rL k+Ae +gvpfefn  +a  ++++e+++L v++gE
  AA2G00159 247 AEAVKNETFVHIIDFQISQGGQWVSLIRALGARPGGPPKVRITGIDDPRSSfaRQGGLELVGQRLGKLAEICGVPFEFNG-AALCCTEVEIDKLGVRTGE 345
                ************************************************999999**************************.899**************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                alaVn+ l lh+++desv++e++rd++L+lvk+lsPkvv++veqea++n+++F  rf+e++++y a+f+s+++kl+r+++eri+vE+++l+reivn+vac
  AA2G00159 346 ALAVNFPLVLHHMPDESVTVENHRDRLLRLVKKLSPKVVTLVEQEANTNTAPFYPRFVETMNHYLAVFESIDVKLGRDHKERINVEQHCLAREIVNLVAC 445
                **************************************************************************************************** PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                eg er+erhe l+kW++r+e+aGFkp+pls++++ ++k ll+ ++++ y +ee++g+l+lgW+++ L++ +aWr
  AA2G00159 446 EGVEREERHEVLGKWKSRFEMAGFKPYPLSSYVNGTIKGLLESYSDK-YILEERDGALFLGWNKQLLITSCAWR 518
                *********************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.323122499IPR005202Transcription factor GRAS
PfamPF035142.3E-131150518IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MEATQKHMIQ DGSSMFYHQK SVNKHMDMSV QTYDSYCTLE SSSGTQSHPC PYNSSSTTSF  60
SSNESPISQP NNSKYYAYHS PDNPSGSPLS GSSATNNETE LSLMLKDLET AMMEPDLDHN  120
TFADITNNGG YQQRVSYRCI DMISRGDLKG TLCECAKAIE NNDIAMTDWL IAQLQTMVSV  180
SGEPIQRLGA YMLEGLIARL ASSGSSIYKA LKCKEPTGPE LLTYMHILYE ACPYFKFGYE  240
SANGAIAEAV KNETFVHIID FQISQGGQWV SLIRALGARP GGPPKVRITG IDDPRSSFAR  300
QGGLELVGQR LGKLAEICGV PFEFNGAALC CTEVEIDKLG VRTGEALAVN FPLVLHHMPD  360
ESVTVENHRD RLLRLVKKLS PKVVTLVEQE ANTNTAPFYP RFVETMNHYL AVFESIDVKL  420
GRDHKERINV EQHCLAREIV NLVACEGVER EERHEVLGKW KSRFEMAGFK PYPLSSYVNG  480
TIKGLLESYS DKYILEERDG ALFLGWNKQL LITSCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-621515187375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA2G00159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147822.10.0PREDICTED: scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A397YTU50.0A0A397YTU5_BRACM; Uncharacterized protein
TrEMBLM4DQR70.0M4DQR7_BRARP; Uncharacterized protein
STRINGBra018860.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]