PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676748840
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 537aa    MW: 59764.1 Da    PI: 5.8293
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676748840genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.22.8e-1371695373374
       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                 +L+ecA+av++ d +++++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal++++ +     e l+++++++e++P++kf++  aN aI
  676748840 169 GTLYECAKAVENYDVTMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPT---GPELLTYMHILYEACPYFKFGYESANGAI 265
                689****************************************************************9...9**************************** PP

       GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                 eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+  ++  le +g+rL k+Ae +gvpfef+  +a  ++++e+e+L v++gE
  676748840 266 AEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPKVRITGIDDPRSSfaRQGGLELVGQRLGKLAEMCGVPFEFHG-AALCCTEVEIEKLGVRNGE 364
                ************************************************999999**************************.899**************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                alaVn+ l lh+++desv++e++rd++L+lvk+lsP+vv++veqea++n+++Fl rf+e++++y a+f+s+++kl+r+++eri+vE+++l+re+vn++ac
  676748840 365 ALAVNFPLVLHHMPDESVTVENHRDRLLRLVKRLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIAC 464
                **************************************************************************************************** PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                eg er+erhe l+kWr+r+++aGFkp+pls+++++++k ll+ ++++ y++ee++g+l+lgWk++pL++ +aWr
  676748840 465 EGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEK-YTLEERDGALYLGWKNQPLITSCAWR 537
                *********************************************65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.48141518IPR005202Transcription factor GRAS
PfamPF035149.6E-135169537IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MEATQKHIIQ DGSSLFYHQP SSVQQMDISV QTFDSYCTLE SSSGTKSHPC PNNANNNNTS  60
STTSFSSNGS PISQSNNNNN NTSRFSEFNH SPDDNNNNNS PLSGSSATNN NETELSLMLK  120
DLETAMMEPD LDSSFNGYDH QGGFGQQHRA VSSAMYRCME MVSRGDLKGT LYECAKAVEN  180
YDVTMTDWLI SQLQQMVSVS GEPVQRLGAY MLEGLVARLA SSGSSIYKAL RCKDPTGPEL  240
LTYMHILYEA CPYFKFGYES ANGAIAEAVK NESFVHIIDF QISQGGQWVS LIRALGARPG  300
GPPKVRITGI DDPRSSFARQ GGLELVGQRL GKLAEMCGVP FEFHGAALCC TEVEIEKLGV  360
RNGEALAVNF PLVLHHMPDE SVTVENHRDR LLRLVKRLSP NVVTLVEQEA NTNTAPFLPR  420
FVETMNHYLA VFESIDVKLA RDHKERINVE QHCLAREVVN LIACEGVERE ERHEPLGKWR  480
SRFHMAGFKP YPLSSYVNAT IKGLLESYSE KYTLEERDGA LYLGWKNQPL ITSCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-601705377375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676748840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527240.0AK352724.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024006003.10.0scarecrow-like protein 5
RefseqXP_024006004.10.0scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A1J3EW770.0A0A1J3EW77_NOCCA; Scarecrow-like protein 5
STRINGXP_006393131.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]