PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10347s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 423aa    MW: 47685 Da    PI: 5.6782
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10347s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.42.4e-137624224374
                  GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                           +L++cA+avs+++l +a++++ +l+ ++s +g+p+qRl ay++e+L arla s+s++yk+l+++e +   s e l+++ +++ev+P++k
  Araha.10347s0004.1.p  62 VLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPE---SYEFLSYVYVLHEVCPYFK 147
                           79****************************************************************9...9****************** PP

                  GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                           f+++ aN aI ea++ eer+HiiDf+i+qG QW++L+qa+a+Rp+g+p++RiTgvg+        l ++++rL+k+A++++vpf+fn+ 
  Araha.10347s0004.1.p 148 FGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWISLIQAFAARPGGAPNIRITGVGD-----VSVLVTVKKRLEKLAKKFDVPFRFNA- 230
                           *********************************************************.....89************************. PP

                  GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           v++   ++e+e+L+v++gEal Vn++++lh+l+desvs+e++rd++L++vkslsPkvv++veqe+++n+++Fl rfle+l+yy+a+f+s
  Araha.10347s0004.1.p 231 VSRPSCEVEVENLDVREGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFES 319
                           799************************************************************************************** PP

                  GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                           +++ lpr+++eri++E+++l+r++vn++acegaer+erhe l+kW++r+++aGF+p+pls+ + +++++llr ++ +gy +ee++g+l+
  Araha.10347s0004.1.p 320 IDVMLPRNHKERINIEQHCLARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYS-NGYAIEERDGALY 407
                           **************************************************************************9.9************ PP

                  GRAS 360 lgWkdrpLvsvSaWr 374
                           lgW+dr Lvs +aW+
  Araha.10347s0004.1.p 408 LGWMDRILVSSCAWK 422
                           **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.90133403IPR005202Transcription factor GRAS
PfamPF035148.1E-13562422IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MENVRGSRHN LREVETIMLK PLPEIAESID DAICHELSMW PEEANDLLLI VEAISRGDLK  60
LVLVACAKAV SENNLLMARW CMGELRGMVS ISGEPIQRLG AYMLEGLVAR LAASGSSIYK  120
SLQSREPESY EFLSYVYVLH EVCPYFKFGY MSANGAIAEA MKDEERIHII DFQIGQGSQW  180
ISLIQAFAAR PGGAPNIRIT GVGDVSVLVT VKKRLEKLAK KFDVPFRFNA VSRPSCEVEV  240
ENLDVREGEA LGVNFAYMLH HLPDESVSME NHRDRLLRMV KSLSPKVVTL VEQECNTNTS  300
PFLPRFLETL SYYTAMFESI DVMLPRNHKE RINIEQHCLA RDVVNIIACE GAERIERHEL  360
LGKWKSRFSM AGFEPYPLSS IISATIRALL RDYSNGYAIE ERDGALYLGW MDRILVSSCA  420
WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-62634228375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10347s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069550.0AC006955.6 Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence.
GenBankAC0072110.0AC007211.6 Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence, complete sequence.
GenBankAF2107320.0AF210732.1 Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds.
GenBankAK1752100.0AK175210.1 Arabidopsis thaliana mRNA for putative SCARECROW gene regulator, complete cds, clone: RAFL21-63-H23.
GenBankBT0264550.0BT026455.1 Arabidopsis thaliana At2g04890 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885778.10.0scarecrow-like protein 21
SwissprotQ9S7H50.0SCL21_ARATH; Scarecrow-like protein 21
TrEMBLD7L8K00.0D7L8K0_ARALL; Uncharacterized protein
STRINGscaffold_303269.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.10.0SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]