PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009151613.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRAS | ||||||||
Protein Properties | Length: 497aa MW: 55728.2 Da PI: 6.5142 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 454.1 | 8.7e-139 | 127 | 497 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + L++cA+a+s++dl +a++++++l++++s +g+p+qRl ay++e+L a+la+s+s++yk+l+ +++ s+e l+++++++ev+P++kf+++ XP_009151613.1 127 RADLVSCAQALSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAKLASSGSSIYKSLNRFPEP--ASTELLSYMHILYEVCPYFKFGYM 219 678************************************************************988887..599********************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN aI ea+++++rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++ +s + l+ +g+rLak+A++++vpfefn v+ + +++ XP_009151613.1 220 SANGAIAEAMKEDNRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDTTSAyaRGGGLSIVGNRLAKLAKQFNVPFEFNS-VSVSASEV 313 *****************************************************998899999************************.7999**** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +l++L v+ gEalaVn+++ lh+++desvs+e++rd++L++vkslsPkvv++veqe+++n++sF+ rf e+++yy a+f+s++++lpr++++ri+ XP_009151613.1 314 KLKDLGVRLGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTASFFPRFKETMDYYDAMFESIDVTLPRNHKQRIN 408 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vE+++l+r++vn++acega+r+erhe l+kWr+r+e+aGF+++pls +++++k+llr+++++ yr+ee++g+l+lgW++r Lv+ +aW+ XP_009151613.1 409 VEQHCLARDVVNIIACEGADRVERHELLGKWRSRFEMAGFTSYPLSPLVNSTIKSLLRNYSDK-YRLEERDGALYLGWMQRDLVASCAWK 497 *************************************************************55.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.527 | 100 | 478 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-136 | 127 | 497 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MYKHPRQETE AYTLPPFEAN SVGKLRYIPA HNSLKRYCML EPSSSSSLVS PAYAVPSNAT 60 VNSSAHEDTS GSCVTDDFND KIKELETVMM GPDSLVFDYN DSFDSTSCQE TNSWRSTLEA 120 ISRRDLRADL VSCAQALSEN DLMMAHSMME KLRQMVSVSG EPIQRLGAYL LEGLVAKLAS 180 SGSSIYKSLN RFPEPASTEL LSYMHILYEV CPYFKFGYMS ANGAIAEAMK EDNRVHIIDF 240 QIGQGSQWVT LIQAFAARPG GPPRIRITGI DDTTSAYARG GGLSIVGNRL AKLAKQFNVP 300 FEFNSVSVSA SEVKLKDLGV RLGEALAVNF AFVLHHMPDE SVSTENHRDR LLRMVKSLSP 360 KVVTLVEQES NTNTASFFPR FKETMDYYDA MFESIDVTLP RNHKQRINVE QHCLARDVVN 420 IIACEGADRV ERHELLGKWR SRFEMAGFTS YPLSPLVNST IKSLLRNYSD KYRLEERDGA 480 LYLGWMQRDL VASCAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-64 | 130 | 497 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.25091 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009151613.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352533 | 0.0 | AK352533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-F03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009151613.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_009151614.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_009151615.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_009151616.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_022543510.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_022543511.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_022543512.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_022543514.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_022543515.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_022543516.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_022543517.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_022543518.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_022543519.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A397Z313 | 0.0 | A0A397Z313_BRACM; Uncharacterized protein | ||||
STRING | Bra037509.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM621 | 28 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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