PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0023.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 424aa    MW: 47646.9 Da    PI: 5.4982
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.34e-136634234374
                  GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                           +L++cA+avs+++l +a++++ +l+ ++s +g p+qRl ay++e+L arla s+s++yk+l+++e +   s e l+++ +++ev+P++k
  Bostr.19424s0023.1.p  63 VLVACAKAVSENNLLMARWCMGELRGMVSISGVPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPE---SYEFLSYVYVLHEVCPYFK 148
                           79****************************************************************9...9****************** PP

                  GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                           f+++ aN aI ea++ eer+HiiDf+i+qG QW+aL+qa+a+Rp+g+p++RiTg+g+        l ++++rL+k+A++++vpf+fn+ 
  Bostr.19424s0023.1.p 149 FGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGIGD-----GSVLGTVKKRLEKLAKKFDVPFKFNA- 231
                           *********************************************************.....89************************. PP

                  GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           v++   ++e e+L+v++gEal Vn++++lh+l+desvs+e++rd++L++vkslsPkvv++veqe+++n+++Fl rfle+l+yy+a+f+s
  Bostr.19424s0023.1.p 232 VSRPSCEVEAENLDVQEGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFES 320
                           799************************************************************************************** PP

                  GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                           +++ lpr+++eri++E+++l+r++vn++acegaer+erhe l+kW++r+++aGF+p+pls+ + +++++llr ++ +gy +ee++g+l+
  Bostr.19424s0023.1.p 321 IDVMLPRDHKERINIEQHCLARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYS-NGYGIEERDGALY 408
                           **************************************************************************9.9************ PP

                  GRAS 360 lgWkdrpLvsvSaWr 374
                           lgW+dr Lvs +aW+
  Bostr.19424s0023.1.p 409 LGWMDRILVSSCAWK 423
                           **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.36734404IPR005202Transcription factor GRAS
PfamPF035141.4E-13363423IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MMDNVRGSRH NLREVETIML QPLPEIAESI NDAICHELSM WPEDANDLLL IVEAISRGDL  60
KWVLVACAKA VSENNLLMAR WCMGELRGMV SISGVPIQRL GAYMLEGLVA RLAASGSSIY  120
KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ  180
WIALIQAFAA RPGGAPNIRI TGIGDGSVLG TVKKRLEKLA KKFDVPFKFN AVSRPSCEVE  240
AENLDVQEGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT  300
SPFLPRFLET LSYYTAMFES IDVMLPRDHK ERINIEQHCL ARDVVNIIAC EGAERIERHE  360
LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYGI EERDGALYLG WMDRILVSSC  420
AWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-63644238375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069550.0AC006955.6 Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence.
GenBankAC0072110.0AC007211.6 Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence, complete sequence.
GenBankAF2107320.0AF210732.1 Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds.
GenBankAK1752100.0AK175210.1 Arabidopsis thaliana mRNA for putative SCARECROW gene regulator, complete cds, clone: RAFL21-63-H23.
GenBankBT0264550.0BT026455.1 Arabidopsis thaliana At2g04890 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467047.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9S7H50.0SCL21_ARATH; Scarecrow-like protein 21
TrEMBLD7L8K00.0D7L8K0_ARALL; Uncharacterized protein
STRINGBostr.19424s0023.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.10.0SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]