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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_013602599.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
GRAS |
| Protein Properties |
Length: 530aa MW: 58711.7 Da PI: 6.3676 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013602599.1 | genome | NCBI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 405.8 | 4.1e-124 | 153 | 523 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
l+e+L+e+A+avs+gd+++a ++ l++++s +g+p+qRl +y++e+L+arl++++ ++y+al+++e + e ++++ +++e++P+ kf++
XP_013602599.1 153 LKEVLVEAARAVSEGDFAAACGFIDVLEQMVSVSGTPIQRLGTYMAEGLRARLQGTGGNIYRALKCNEPT---GRELMSYMGVLYEICPYWKFAY 244
5789*****************************************************************9...99999999************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
+aN aIleav+ge+rvHiiDf+i qG Q++ L+++La+Rp+gpp lR+Tgv++++s + l+ +ge+La++A++ gvpfef+ + + +
XP_013602599.1 245 NAANAAILEAVAGEKRVHIIDFQIAQGSQYMFLINELAKRPGGPPLLRVTGVDDSQSRyaRGGGLSLIGEKLADMAQSRGVPFEFHD-AIMSGCK 338
******************************************************999899999************************.7888999 PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl Pk+v++veqe+++n+++Fl rf+e+l+yy+a+f+s++a pr++++ri
XP_013602599.1 339 VHREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLGPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRI 433
99********************************************************************************************* PP
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ E+++++r+ivn++ace+aer+erhe l+kWr r+++aGF p+s++aa a+ +l+ ++++ y++ e++g+l+l Wk+rp+ ++SaW+
XP_013602599.1 434 SAEQHCVARDIVNMIACEEAERVERHEVLGKWRVRMMMAGFMGWPVSSSAAFAASEMLKGYDKN-YKLGESEGALYLFWKRRPMATCSAWK 523
**************************************************************66.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 530 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQV HCSPQFQVID NKKGFSDTPS KESFFTLESS TASGPLPSYE 60
SPSVSITSGR SPFSPQASCI SDLHPSPENI YGSPLSGASS HVYDEAHVKN KIRELEVSLL 120
SVDPKVEEYS GFTPAGKSWN WDELLALTPQ LDLKEVLVEA ARAVSEGDFA AACGFIDVLE 180
QMVSVSGTPI QRLGTYMAEG LRARLQGTGG NIYRALKCNE PTGRELMSYM GVLYEICPYW 240
KFAYNAANAA ILEAVAGEKR VHIIDFQIAQ GSQYMFLINE LAKRPGGPPL LRVTGVDDSQ 300
SRYARGGGLS LIGEKLADMA QSRGVPFEFH DAIMSGCKVH REHLGVEPGF AVVVNFPYVL 360
HHMPDESVSV ENHRDRLLHL IKSLGPKLVT LVEQESNTNT SPFLSRFVET LDYYTAMFES 420
IDAARPRDDK QRISAEQHCV ARDIVNMIAC EEAERVERHE VLGKWRVRMM MAGFMGWPVS 480
SSAAFAASEM LKGYDKNYKL GESEGALYLF WKRRPMATCS AWKPNPNQIV
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC232568 | 0.0 | AC232568.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH122A22, complete sequence. |
