PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.5224s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GRAS | ||||||||
Protein Properties | Length: 491aa MW: 55174.1 Da PI: 6.5825 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 460.9 | 7.4e-141 | 120 | 490 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 + L++cA+a+s++dl +a++++++l++++s +g+p+qRl ay++e+L a+la+s+s++ykal+ +++ s+e l+++++++ev+P++ Bostr.5224s0004.1.p 120 RADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKALNRCPEP--ASTELLSYMHILYEVCPYF 207 678************************************************************666665..499**************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179 kf+++ aN aI ea+++e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s + l+ +g++La++A +++vpfefn Bostr.5224s0004.1.p 208 KFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQWVSLIQAFAARPGGPPRIRITGIDDMTSAyaRGGGLSIVGNKLAELAMQFNVPFEFN 297 **********************************************************999999999*********************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 + v+ +++++++++L v+pgEalaVn+++ lh+++desvs+e++rd++L++vkslsPkvv++veqe+++n++ F+ rf+e+++yy+a+f+ Bostr.5224s0004.1.p 298 P-VSVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFE 386 *.7999************************************************************************************ PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359 s++++lpr++++ri+vE+++l+r++vn++acega+r+erhe l+kWr+r+e+aGF+p+pls +++++k+llr+++++ yr+ee++g+l+ Bostr.5224s0004.1.p 387 SIDVTLPRDHKQRINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFEMAGFTPYPLSPLVNSTIKSLLRTYSKK-YRLEERDGALY 475 ****************************************************************************66.*********** PP GRAS 360 lgWkdrpLvsvSaWr 374 lgW++r Lv+ +aW+ Bostr.5224s0004.1.p 476 LGWMHRDLVASCAWK 490 **************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 70.083 | 93 | 471 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-138 | 120 | 490 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MYKQPRQENE AYSFEPNSAG KLRYLPVNNS RKRFCTLEPS PDSPAYNALS TVTYEDTCGS 60 CVTDDLNDFK HKIKEIETVM MGPDSLDLLV DCRDSFDSTA CQEINSWRST LEAISRRDLR 120 ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK 180 ALNRCPEPAS TELLSYMHIL YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ 240 WVSLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NKLAELAMQF NVPFEFNPVS 300 VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE 360 QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI NVEQHCLARD VVNIIACEGA 420 DRVERHELLG KWRSRFEMAG FTPYPLSPLV NSTIKSLLRT YSKKYRLEER DGALYLGWMH 480 RDLVASCAWK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-67 | 123 | 490 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.5224s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF153443 | 0.0 | AF153443.1 Arabidopsis thaliana phytochrome A signal transduction 1 protein (PAT1) mRNA, complete cds. | |||
GenBank | AK317252 | 0.0 | AK317252.1 Arabidopsis thaliana AT5G48150 mRNA, complete cds, clone: RAFL22-43-D17. | |||
GenBank | AK317747 | 0.0 | AK317747.1 Arabidopsis thaliana AT5G48150 mRNA, complete cds, clone: RAFL22-04-F15. | |||
GenBank | BT025326 | 0.0 | BT025326.1 Arabidopsis thaliana At5g48150 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280361.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | R0G9L1 | 0.0 | R0G9L1_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.5224s0004.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM621 | 28 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.5224s0004.1.p |
Publications ? help Back to Top | |||
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