PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0117.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 528aa    MW: 58823.2 Da    PI: 5.8107
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0117.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.51.1e-1371595273374
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                            +L+ecA+av++ d+e++++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal++++ +     e l+++++++e++P++
  Bostr.26675s0117.1.p 159 GVLYECAKAVENYDMEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPT---GPELLTYMHILYEACPYF 244
                           689****************************************************************9...9***************** PP

                  GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           kf++  aN aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+  ++  le +g+rL ++Ae +gvpfef
  Bostr.26675s0117.1.p 245 KFGYESANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPKVRITGIDDPRSSfaRQGGLELVGQRLGQLAEMCGVPFEF 333
                           ***********************************************************999999************************ PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                           +  +a  ++++e+e+L v++gEalaVn+ l lh+++desv++e++rd++L+lvk+lsP+vv++veqea++n+++Fl rf+e++++y a+
  Bostr.26675s0117.1.p 334 HG-AALCCTEVEMEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKRLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAV 421
                           **.899*********************************************************************************** PP

                  GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                           f+s+++kl+r+++eri+vE+++l+re+vn++aceg er+erhe l+kWr+r+++aGFkp+pls+++++++k ll+ ++++ y++ee++g
  Bostr.26675s0117.1.p 422 FESIDVKLARDHKERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEK-YTLEERDG 509
                           ******************************************************************************65.******** PP

                  GRAS 357 slvlgWkdrpLvsvSaWr 374
                           +l+lgWk++pL++ +aWr
  Bostr.26675s0117.1.p 510 ALYLGWKNQPLITSCAWR 527
                           *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.702131508IPR005202Transcription factor GRAS
PfamPF035143.8E-135159527IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MEATQKHMIQ DGSSVFYHPP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LDNNNNNNSS  60
STTSFSSNES PISQANNNNS SRFNHSPDDN NNSPLSGSSA TNNNETELSH MLKDLETAMM  120
EPDLDNSFNH QGGFGQQHRV VSSAMYRSME MISRGDLKGV LYECAKAVEN YDMEMTDWLI  180
SQLQQMVSVS GEPVQRLGAY MLEGLVARLA SSGSSIYKAL RCKDPTGPEL LTYMHILYEA  240
CPYFKFGYES ANGAIAEAVK NESFVHIIDF QISQGGQWVS LIRALGARPG GPPKVRITGI  300
DDPRSSFARQ GGLELVGQRL GQLAEMCGVP FEFHGAALCC TEVEMEKLGV RNGEALAVNF  360
PLVLHHMPDE SVTVENHRDR LLRLVKRLSP NVVTLVEQEA NTNTAPFLPR FVETMNHYLA  420
VFESIDVKLA RDHKERINVE QHCLAREVVN LIACEGVERE ERHEPLGKWR SRFHMAGFKP  480
YPLSSYVNAT IKGLLESYSE KYTLEERDGA LYLGWKNQPL ITSCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-601615278375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0117.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125610.0AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAC0792790.0AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence.
GenBankAY0349290.0AY034929.1 Arabidopsis thaliana putative scarecrow protein (At1g50600) mRNA, partial cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868144.10.0LOW QUALITY PROTEIN: scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A1P8AW900.0A0A1P8AW90_ARATH; Scarecrow-like 5
STRINGBostr.26675s0117.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]