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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_013604917.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
GRAS |
| Protein Properties |
Length: 533aa MW: 58806.5 Da PI: 5.9483 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013604917.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 395.3 | 6.6e-121 | 156 | 526 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
l+e+Lle A+av++gd++ a ++ l++++s +g+p+qRl ay++e+L+arl +s+ ++y+al+++e + e ++++ +++e++P+ kf++
XP_013604917.1 156 LKEVLLEGARAVADGDFATACGFIDVLEQMVSVSGSPIQRLGAYMAEGLRARLEGSGGNIYRALKCNEPT---GRELMSYMGVLYEICPYWKFAY 247
5789*****************************************************************9...99999999************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
+ aN aIlea++g++r+H+iDf+i qG Q++ L+++La+Rp+gpp lR+Tgv++++s + l +ge+La++A+++gvpfef+ + + +
XP_013604917.1 248 MSANAAILEATAGDNRIHVIDFQIAQGSQYMFLIHELAKRPGGPPLLRVTGVDDSQSYyaRGGGLTLVGEKLANMAKSCGVPFEFHD-AIMSGCE 341
******************************************************998899999************************.7888999 PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl P++v++veqe+++n+++Fl rf+++l+yy+a+f+s++a pr++++ri
XP_013604917.1 342 VHREHLGVEPGFAVVVNFPFVLHHMPDESVSVENHRDRLLHLIKSLGPRLVTLVEQESNTNTSPFLSRFVQTLDYYTAMFESIDAARPRDEKQRI 436
99********************************************************************************************* PP
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ E+++++r+ivn++ace++er+erhe l+kWr r+++aGF p++ +aa a+ +l+ ++++ y++ ++g+l+l Wk+rp+ ++SaW+
XP_013604917.1 437 SAEQHCVARDIVNMIACEERERVERHEVLGKWRVRMMMAGFVGWPVGGSAAFAASEMLKGYDKN-YKLGGSEGALYLFWKRRPMATCSAWK 526
**************************************************************66.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 533 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQP HCSPQFQMID NNNNNGSSKE SFFTLESSTA SGTTLPSYDS 60
PSSVSITSGR SPFSPQGSHS CISDPHPSPE NVYESPLSAA SSYVYDEAGV KSKIRELEET 120
LLSSDPKVEE YSGFSPAAGK SWNWDELLAL TPQLDLKEVL LEGARAVADG DFATACGFID 180
VLEQMVSVSG SPIQRLGAYM AEGLRARLEG SGGNIYRALK CNEPTGRELM SYMGVLYEIC 240
PYWKFAYMSA NAAILEATAG DNRIHVIDFQ IAQGSQYMFL IHELAKRPGG PPLLRVTGVD 300
DSQSYYARGG GLTLVGEKLA NMAKSCGVPF EFHDAIMSGC EVHREHLGVE PGFAVVVNFP 360
FVLHHMPDES VSVENHRDRL LHLIKSLGPR LVTLVEQESN TNTSPFLSRF VQTLDYYTAM 420
FESIDAARPR DEKQRISAEQ HCVARDIVNM IACEERERVE RHEVLGKWRV RMMMAGFVGW 480
PVGGSAAFAA SEMLKGYDKN YKLGGSEGAL YLFWKRRPMA TCSAWKPNPN QIV
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
