PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM3406
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Subtree rooted at node 115: /----- GSBRNA2T00042151001 [Brassica napus] (2) /-100+ | \----- XP_009150737.1 [Brassica rapa] (35) /---------100--------+ | | /----- XP_013623004.1 [Brassica oleracea] (45) | \-100+ | \----- GSBRNA2T00013286001 [Brassica napus] (62) | | /----- RrC2220_p2 [Raphanus raphanistrum] (6) | /---100---+ | | \----- Rsa1.0_01745.1_g00002.1 [Raphanus sativus] (48) | | | | /----- XP_009102251.1 [Brassica rapa] (8) | /-100-+ /-94-+ | | | | \----- XP_013593214.1 [Brassica oleracea] (47) | | | | | | \-100+---------- GSBRNA2T00029080001 [Brassica napus] (42) | | | | | \---------- GSBRNA2T00083691001 [Brassica napus] (51) | | | | /----- GSBRNA2T00044990001 [Brassica napus] (21) | | /-100+ | | | \----- XP_009112483.1 [Brassica rapa] (56) |----64---+ /-100+ | | | | /----- XP_013606719.1 [Brassica oleracea] (30) | | | \-100+ | |-100-+ \----- GSBRNA2T00002971001 [Brassica napus] (50) | | | | | | /----- RrC3431_p3 [Raphanus raphanistrum] (54) /-59-+ | \---100---+ | | | \----- Rsa1.0_04588.1_g00001.1 [Raphanus sativus] (59) | | | | | \--------------------- Tp3g31710 [Thellungiella parvula] (44) | | | |------------------------------- KFK40214.1 [Arabis alpina] (11) | | | | /---------- Bostr.18351s0299.1.p [Boechera stricta] (13) | | | | | /-75-+ /----- Cagra.6054s0001.1.p [Capsella grandiflora] (15) | | | \-100+ | | | \----- Carubv10014138m [Capsella rubella] (55) | | | | | /-100-+ /----- Csa19g057900.1 [Camelina sativa] (22) /-100+ | | | /-100+ | | | | | | \----- Csa15g076860.1 [Camelina sativa] (24) | | | | \-100+ | | | /-100+ \---------- Csa01g041450.1 [Camelina sativa] (25) | | | | | | | | | | /----- 480739 [Arabidopsis lyrata] (34) | | |-53-+ \------100------+ | | | | \----- AT2G18300.3 [Arabidopsis thaliana] (46) | | | | /----92----+ | | \-------------------------- 676734484 [Sisymbrium irio] (16) | | | | | | | \------------------------------- Thhalv10022772m [Eutrema salsugineum] (28) | | | | | \------------------------------------ AA33G00144 [Aethionema arabicum] (18) | | | | /----- XP_010531040.1 [Tarenaya hassleriana] (7) | | /-89-+ | | | \----- XP_010526758.1 [Tarenaya hassleriana] (52) | \--------------97--------------+ | \---------- XP_010548320.1 [Tarenaya hassleriana] (9) | | /----- RrC603_p3 [Raphanus raphanistrum] (3) | /---100---+ | | \----- Rsa1.0_00327.1_g00010.1 [Raphanus sativus] (27) | | | /-100-+ /----- GSBRNA2T00075217001 [Brassica napus] (23) | | | /-100+ | | | | \----- XP_009138432.1 [Brassica rapa] (43) | /-74-+ \-100+ | | | \---------- XP_013595760.1 [Brassica oleracea] (58) | | | | | \--------------------- Tp7g34190 [Thellungiella parvula] (39) | | | | /----- XP_013625068.1 [Brassica oleracea] (5) | | /-100+ | /-99-+ | \----- GSBRNA2T00008502001 [Brassica napus] (20) | | | /-100+ /-100+ | | | | /----- XP_009109313.1 [Brassica rapa] (14) | | | | | \-100+ | | | | /-100-+ \----- GSBRNA2T00027235001 [Brassica napus] (32) | | | | | | | | /-82-+ | | | /----- Rsa1.0_00007.1_g00023.1 [Raphanus sativus] (26) | | | | \-93-+ \---100---+ | | | | | \----- RrC1524_p3 [Raphanus raphanistrum] (60) | | | | | | | | | \--------------------- 676721078 [Sisymbrium irio] (37) | | | | | | | \------------------------------- Thhalv10025820m [Eutrema salsugineum] (57) | | | | | | /----- Csa12g004930.1 [Camelina sativa] (4) | | | /-94-+ | | /-77-+ | \----- Csa10g004720.1 [Camelina sativa] (49) | | | | /-96-+ | | | | | \---------- Csa11g005240.1 [Camelina sativa] (12) /-100+ | | | /--97-+ | | | | | | | /----- Carubv10005334m [Capsella rubella] (29) | | | | | | \---100---+ | | | | | /-100+ \----- Cagra.1695s0018.1.p [Capsella grandiflora] (61) | | | | | | | | | | /-100+ | | \--------------------- Bostr.7867s1511.1.p [Boechera stricta] (63) | | | | | \---100---+ | | | | | | /---------- AT4G36540.1 [Arabidopsis thaliana] (17) | | | | | | | | | | | | \------100------+ /----- Araha.39182s0003.1.p [Arabidopsis halleri] (38) --100+ | \-100-+ | \-100+ | | | | \----- 856896 [Arabidopsis lyrata] (41) | | | | | | | \----------------------------------------- KFK30277.1 [Arabis alpina] (31) | | | | | \---------------------------------------------- AA30G00162 [Aethionema arabicum] (40) | | | \--------------------------------------------------------- evm.model.supercontig_6.130 [Carica papaya] (10) | \-------------------------------------------------------------- Thecc1EG000362t1 [Theobroma cacao] (36) Root part of tree: /------------------------------------------------------------------- Cotton_A_14779_BGI-A2_v1.0 [Gossypium arboreum] (1) | |------------------------------------------------------------------- Gh_A12G0596 [Gossypium hirsutum] (53) + | /--------------------------------- (115) | | \---------------100---------------+--------------------------------- Gh_D12G0607 [Gossypium hirsutum] (19) | \--------------------------------- Gorai.008G067500.1 [Gossypium raimondii] (33) |