PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0596
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 436aa    MW: 48192.1 Da    PI: 7.1586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0596genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09190237455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  Gh_A12G0596 190 SHSLAERARREKISKKMKCLQDLVPGC----NTITGKAGMLDEIINYVQSLQ 237
                  8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.14E-8184241No hitNo description
SuperFamilySSF474598.11E-16184253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-17186255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7190237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-9192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDVTLLDRQQ ATCPLELCAS SVPLFQSYLG SGPIVELKRP EAYLSGDGFH EFVYFPVGGG  60
TEFGDSEKLN LVPPDAAPGY CISRTSSCQM TAFHAAAMKE EREDMILEKM ESTPGSGSRE  120
SFTKRKAEVV ADRKSKDKRI KGELEGESEV KTKCSTQVSR NSSKENSKAC EVRKPDYIHV  180
RARRGQATDS HSLAERARRE KISKKMKCLQ DLVPGCNTIT GKAGMLDEII NYVQSLQRQV  240
EFLSMKIAAL NSSAEFNVEN LPIKELPSYV ANFPAAAKLP AMPNLTCFQL NSMQKEAVNC  300
MLNETMHPPL TATEGIASAS VSIPEQALSS STITILFLES RQTSRGIGIL NATIHLLYSL  360
YFSCKRRESV QDHAKTSIKK QMGIENDRGG IVLETLSHCW GVNKDDRDEL KGQELGEEMA  420
PQPPNLCLMQ ICKLLH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.133790.0ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713243.10.0PREDICTED: transcription factor BEE 2-like isoform X1
RefseqXP_016713251.10.0PREDICTED: transcription factor BEE 2-like isoform X2
TrEMBLA0A2P5XYH50.0A0A2P5XYH5_GOSBA; Uncharacterized protein
STRINGGorai.008G067500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.15e-63BR enhanced expression 2