PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g004720.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 289aa MW: 33004.4 Da PI: 7.2369

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g004720.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.6	1.1e-08	153	199	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++++P + +k Ka +L + ++Y++sLq Csa10g004720.1 153 HSLAERARREKISKKMKCLQDIVPGC----NKVTGKAGMLDEIINYVQSLQ 199 999********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.28E-7	146	203	No hit	No description
SuperFamily	SSF47459	3.53E-16	146	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.634	148	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-17	150	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-6	153	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-10	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDLSVLDRLK WLQQQQLVSP EFLQIIGSDG REELKRVETY LGNNNDELQS FRHFQEFGPD 60 YDTIDGCISR TSSFHMEPVK NNEDNRAIAL HNKRKLEGKT EQREKKKKIK AEDETESSMK 120 GKSNMSNTET SSEIQKPDYI HVRARRGEAT DRHSLAERAR REKISKKMKC LQDIVPGCNK 180 VTGKAGMLDE IINYVQSLQQ QVEFLSMKLS VINPELESHI DELSAKQAYF TGLPEAVSKQ 240 SMMADFRYFP LHQQGSLDYS VINANQTTSL GAVIIFPFHK FQILVTCP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	107	KRKLEGKTEQREKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g004720.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087, ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF370231	0.0	AF370231.1 Arabidopsis thaliana unknown protein (At4g36540) mRNA, complete cds.
GenBank	AY054588	0.0	AY054588.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBank	AY059122	0.0	AY059122.1 Arabidopsis thaliana unknown protein (At4g36540) mRNA, complete cds.
GenBank	BT000388	0.0	BT000388.1 Arabidopsis thaliana Unknown protein (At4g36540) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019086926.1	0.0	PREDICTED: transcription factor BEE 2 isoform X2
Swissprot	Q93VJ4	0.0	BEE2_ARATH; Transcription factor BEE 2
TrEMBL	R0F6F9	0.0	R0F6F9_9BRAS; Uncharacterized protein
STRING	XP_010432168.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3406	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36540.2	1e-170	BR enhanced expression 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Singh M,Gupta A,Singh D,Khurana JP,Laxmi A Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth. Sci Rep, 2017. 7(1): p. 16101 [PMID:29170398]