PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734484
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 357aa    MW: 39933.1 Da    PI: 6.6343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734484genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.1e-062182591055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  676734484 218 KARREKISKKMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 259
                68******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.55E-6193263No hitNo description
PROSITE profilePS5088811.496208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-13218276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001218264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-14221277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MLEGLVAQES LSLSSMDMSV PEGLKWLQQQ QQHQQQQVVS QNSNNSPELL QILQFHGSNN  60
ELLQSTFSHF QMIGSGFGPN YNMGFGPSHE AMDGCISRTS SCQMDPMDTM GIMLKNSEET  120
RAISLKNKRK PEVKTREEEK TEKKIKVEAE TESNMKGKSN MSNTEASSDT SKETSKGASE  180
IQKLDYIHVR ARRGQATDRH SLAERVTKSV SNQCLHYKAR REKISKKMKY LQDLVPGCNK  240
VTGKAGMLDE IINYVQSLQR QVEFLSMKLA VLNPELELAV EDVSVKQFQA YFTNLPVVVA  300
SKPSIMVDVP MFPLDQQGSL DLSVINPNQT ASVEAPSSSW ETQSQSLYNT SSLGFQY
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676734484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533910.0AK353391.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680215.10.0transcription factor HBI1-like
SwissprotQ9ZPW30.0HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A1J3DV330.0A0A1J3DV33_NOCCA; Transcription factor HBI1
STRINGBo3g094060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.20.0bHLH family protein