PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109313.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 300aa    MW: 34560.6 Da    PI: 6.6364
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109313.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84.1e-08148194555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+ +Er RR+++ +++  L++++P +    +k   Ka +L + ++Y++sLq
  XP_009109313.1 148 HSLAERARREKLSKKMKCLQDIVPGC----NKVTGKAGMLDEIINYVQSLQ 194
                     999**********************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.09E-7141198No hitNo description
SuperFamilySSF474592.22E-16141213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.462143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16145211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-6148194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-10149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDLSVLERVK WLQQQQMVSP EFFEILGSDG REELKRVESY LGNNNDEWQS FRHYETIDGC  60
ISRTSSFQME QVKNNEENRA TALQHKRKTE GKTEKIENKK NKKIKTEDET ESSMKGKSNM  120
SNSETSSEIQ KRDYIHVRAR RGEATDRHSL AERARREKLS KKMKCLQDIV PGCNKVTGKA  180
GMLDEIINYV QSLQQQVEFL SMKLSVLNPE LDYHINELST KQFQACFTDL PEAVSKQSMM  240
VDASSFPLQH QESLDYSVIN SIQTTTLGSK DQTSSGWEIH SQSLYNNLRT DSDSSFFSLK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109313.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087, ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527230.0AK352723.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-A24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109313.10.0PREDICTED: transcription factor BEE 2 isoform X1
SwissprotQ93VJ41e-175BEE2_ARATH; Transcription factor BEE 2
TrEMBLM4D2580.0M4D258_BRARP; Uncharacterized protein
STRINGBra010558.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.11e-152BR enhanced expression 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
    Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
    Sci Rep, 2017. 7(1): p. 16101
    [PMID:29170398]