PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g076860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 273aa    MW: 30567.7 Da    PI: 7.9614
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g076860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08119165555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++Y++ Lq
  Csa15g076860.1 119 HSLAERARREKISKKMKYLQDIVPGC----NKVTGKAGMLDEIINYVQCLQ 165
                     999**********************9....677***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.17E-6112169No hitNo description
SuperFamilySSF474591.7E-16112182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.284114164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16115183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-6119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-8120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGYGPQHEAM DGCISRTSSC QMEPVDTMEG LLKNGTEEDR PISLKNKRKQ EVKTREEEKT  60
EKKIKVEADT ESSMKGKSNM RNREASSETS KETLKGVSEI PKLDYIHVRA RRGQATDRHS  120
LAERARREKI SKKMKYLQDI VPGCNKVTGK AGMLDEIINY VQCLQRQVEF LSMKLAVLNP  180
ELELAVEDVS VKQFQAYFTN VVGSSKHSIM VDVPLFPLDQ QGSLDLSAIN PNQTTSIEAV  240
STTIHETKKL PSASWESQSQ SLYNTSSLGF QY*
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g076860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885970.0AF488597.1 Arabidopsis thaliana clone bHLH064 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414188.10.0PREDICTED: transcription factor HBI1 isoform X1
SwissprotQ9ZPW31e-160HBI1_ARATH; Transcription factor HBI1
TrEMBLD7LBA71e-158D7LBA7_ARALL; Basic helix-loop-helix family protein
STRINGXP_010414188.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-145bHLH family protein