PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0607
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 358aa    MW: 39607.1 Da    PI: 6.6239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0607genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-09190237455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Gh_D12G0607 190 SHSLAERARREKISKKMKCLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 237
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.40E-9184241No hitNo description
SuperFamilySSF474591.26E-16184254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.237186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-18186255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6190237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-10192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDVTVLDRQQ ATYPLELFAR SVPLFQSYLG SGPIVELKRP EAYLGGDGFH EFVYFPVGGG  60
PEFGDSEKLN LVPPDAAPGY CISRTSSCQM TAFHAASMKE EREDMILEKM ESTTGSGSRE  120
SFTKRKAEVV ADHKSKDKRI KGEVEGESEV KTKCSTQVSR NSSKENSKAC EVQKPDYIHV  180
RARRGQATDS HSLAERARRE KISKKMKCLQ DLVPGCNKVT GKAGMLDEII NYVQSLQRQV  240
EFLSMKIAAL NSSVEFNVEN LPIKEFPAYV ANFPAAAKLP AMPNLTCFQL NPMQKEAVNC  300
MLNETIHPPL TATEGIASAS VSIPEQALSS STITQLQPFS TWNMDPQGLY NVYDMGFH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.133790.0ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016669819.10.0PREDICTED: transcription factor BEE 2-like isoform X1
TrEMBLA0A1U8I2B60.0A0A1U8I2B6_GOSHI; transcription factor BEE 2-like isoform X1
STRINGGorai.008G067500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.28e-69bHLH family protein