PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g057900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 342aa MW: 38425.3 Da PI: 6.2723 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.4 | 2.6e-08 | 199 | 245 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++++P + +k Ka +L + ++Y++ Lq Csa19g057900.1 199 HSLAERARREKISKKMKYLQDIVPGC----NKVTGKAGMLDEIINYVQCLQ 245 999**********************9....677***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-16 | 192 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.08E-6 | 192 | 249 | No hit | No description |
PROSITE profile | PS50888 | 14.284 | 194 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-16 | 195 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-6 | 199 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-8 | 200 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQVVSQSSN NSPELLHQIL QFHGSNNDEL 60 LQGSFSQFQM IRSGFGPNYN MGYGPQHEAM DGCISRTSSC QMEPVDTMEG LLKNGTEEDR 120 PISLKNKRKQ EVKTREEEKT EKKIKVEADT ESSMKGKSNM RNREASSETS KETLKGVSEI 180 PKLDYIHVRA RRGQATDRHS LAERARREKI SKKMKYLQDI VPGCNKVTGK AGMLDEIINY 240 VQCLQRQVEF LSMKLAVLNP ELELAVEDVS VKQFQAYFTN VVGSSKHSIM VDVPLFPLDQ 300 QGSLDLSAIN PNQTTSIEAP SASWESQSQS LYNTSSLGFQ Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g057900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF412099 | 0.0 | AF412099.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds. | |||
GenBank | AY078030 | 0.0 | AY078030.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010489535.1 | 0.0 | PREDICTED: transcription factor HBI1-like isoform X1 | ||||
Swissprot | Q9ZPW3 | 0.0 | HBI1_ARATH; Transcription factor HBI1 | ||||
TrEMBL | A0A178VRT2 | 0.0 | A0A178VRT2_ARATH; HBI1 | ||||
STRING | XP_010489535.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3406 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18300.2 | 0.0 | bHLH family protein |